Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 2.5e-128 462.2 256 100.0
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 4.0e-105 385.2 256 83.6
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.0e-101 372.9 253 79.1
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 5.9e-101 371.3 256 79.3
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 2.2e-100 369.4 254 78.3
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 2.2e-100 369.4 253 79.4
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 2.2e-100 369.4 253 80.2
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 3.8e-100 368.6 243 80.7
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 2.5e-99 365.9 259 77.6
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.5e-99 364.8 256 78.9
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 6.1e-98 361.3 253 75.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 8.0e-98 360.9 253 76.7
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 8.0e-98 360.9 254 77.6
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.0e-97 360.5 256 77.3
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.0e-97 360.5 254 76.0
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.4e-97 360.1 254 78.0
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.8e-97 357.5 254 77.2
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.2e-96 357.1 266 74.8
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 3.4e-96 355.5 255 76.1
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 3.4e-96 355.5 253 77.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 9.8e-96 354.0 250 77.6
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 9.8e-96 354.0 253 77.1
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 2.2e-95 352.8 247 80.6
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.2e-95 352.8 250 77.2
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.2e-95 352.8 250 78.4
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.8e-95 352.4 251 77.3
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 3.7e-95 352.1 252 75.8
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 6.3e-95 351.3 257 77.8
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 8.3e-95 350.9 257 76.7
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 3.1e-94 349.0 256 74.2
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 4.1e-94 348.6 255 75.7
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.2e-93 347.1 254 76.8
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.6e-93 346.7 257 75.1
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.7e-93 345.9 253 75.1
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.7e-93 345.9 245 79.2
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.0e-92 344.0 253 74.7
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 2.3e-92 342.8 250 77.6
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 6.6e-92 341.3 250 77.2
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 8.6e-92 340.9 250 76.0
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.1e-91 340.5 247 78.9
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.5e-91 339.3 257 74.3
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.3e-91 339.0 256 76.2
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 3.3e-91 339.0 253 73.9
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 5.5e-91 338.2 253 71.5
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 7.2e-91 337.8 254 74.4
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.2e-90 337.0 253 73.1
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.6e-90 336.7 256 73.4
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 6.1e-90 334.7 252 73.8
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.0e-89 334.0 249 73.9
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.0e-89 334.0 256 74.6
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.0e-89 334.0 251 71.7
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.8e-89 333.2 255 73.7
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.0e-89 332.4 252 71.8
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 4.0e-89 332.0 257 71.6
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 5.2e-89 331.6 257 72.0
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 6.8e-89 331.3 258 73.6
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.5e-88 330.1 249 72.3
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.0e-88 329.7 240 76.2
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 7.5e-88 327.8 249 72.7
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 7.5e-88 327.8 257 72.0
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 9.8e-88 327.4 248 75.4
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.3e-87 327.0 251 74.9
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.7e-87 326.6 256 74.2
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 2.8e-87 325.9 257 73.2
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 2.8e-87 325.9 247 79.4
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 3.7e-87 325.5 258 72.9
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 4.9e-87 325.1 202 80.2
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 4.9e-87 325.1 256 70.3
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 8.3e-87 324.3 256 68.8
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.4e-86 322.8 243 73.3
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.1e-86 322.4 256 71.1
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 4.1e-86 322.0 258 72.9
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 7.0e-86 321.2 258 70.9
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 9.2e-86 320.9 256 71.1
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.6e-85 320.1 243 73.7
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 2.0e-85 319.7 240 73.8
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 2.0e-85 319.7 256 71.5
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 2.7e-85 319.3 248 72.6
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 4.5e-85 318.5 244 69.7
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 7.8e-85 317.8 239 73.2
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 7.8e-85 317.8 248 72.6
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 7.8e-85 317.8 241 73.4
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 7.8e-85 317.8 243 72.4
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.7e-84 316.6 246 73.2
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.3e-84 316.2 246 73.2
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 2.5e-83 312.8 263 68.1
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 2.5e-83 312.8 273 67.4
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 5.6e-83 311.6 248 72.2
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 9.5e-83 310.8 252 69.4
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 9.5e-83 310.8 203 73.9
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.2e-82 310.5 247 69.2
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 4.7e-82 308.5 246 70.3
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 4.7e-82 308.5 347 53.3
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.0e-81 307.4 248 70.6
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.3e-81 306.2 277 66.4
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.3e-81 306.2 247 70.0
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 4.4e-80 302.0 247 68.8
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 7.5e-80 301.2 245 70.2
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 6.4e-79 298.1 249 68.7
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 6.4e-79 298.1 249 68.3
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 1.1e-78 297.4 193 77.2
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.4e-78 297.0 247 68.8
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 4.6e-77 292.0 249 68.3
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.2e-74 283.9 250 65.6
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.6e-74 282.3 297 60.3
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.6e-74 282.3 230 65.2
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-73 280.8 254 63.4
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.1e-73 280.8 254 63.4
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.3e-73 279.6 334 53.0
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 5.2e-73 278.5 257 65.8
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 8.9e-73 277.7 257 65.8
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 3.6e-66 255.8 288 54.9
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.1e-65 252.7 251 60.6
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.0e-64 250.0 248 58.5
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.9e-63 245.4 248 55.6
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 6.4e-63 245.0 179 68.7
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 3.2e-62 242.7 220 60.9
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.6e-59 231.9 148 75.7
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 1.2e-58 230.7 248 58.1
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.7e-58 228.8 243 57.2
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 3.1e-57 226.1 247 57.1
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.5e-56 223.8 247 54.3
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 4.2e-54 215.7 136 78.7
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.7e-52 210.3 259 49.0
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 6.9e-49 198.4 130 77.7
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 4.9e-47 192.2 149 78.5
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 9.3e-46 188.0 167 64.7
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.6e-42 177.2 136 69.1
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 5.8e-40 168.7 145 59.3
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 2.2e-39 166.8 256 43.0
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 5.1e-36 155.6 251 39.8
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.7e-36 155.2 342 40.6
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.6e-34 150.6 190 56.3
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 9.9e-32 141.4 223 39.5
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 9.9e-32 141.4 116 80.2
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.2e-29 134.4 232 38.8
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.6e-29 134.0 247 38.5
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.5e-27 127.5 72 86.1
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.8e-26 122.5 109 68.8
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-22 111.3 92 57.6
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.8e-20 104.0 58 84.5
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.9e-19 100.5 79 59.5
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.3e-19 99.4 82 78.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 5.3e-17 92.4 79 55.7
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 9.7e-11 71.6 168 35.1
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 2.4e-09 67.0 64 56.2
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 5.3e-09 65.9 184 31.0
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.2e-07 60.5 53 58.5
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.5e-06 55.8 34 73.5


User provided reference genes

Program Settings