Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 0.0e+00 1307.7 663 100.0
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 0.0e+00 1082.0 672 81.2
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 1.7e-264 916.0 652 70.6
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 5.4e-263 911.0 662 69.0
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 3.6e-259 898.3 664 67.8
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 3.0e-258 895.2 663 67.4
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 4.0e-258 894.8 651 68.5
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 9.8e-257 890.2 672 67.7
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 6.4e-256 887.5 671 67.4
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 1.8e-255 885.9 667 67.0
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 4.1e-255 884.8 662 68.3
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 2.0e-254 882.5 651 69.1
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.5e-254 881.7 652 67.2
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 3.5e-254 881.7 652 67.9
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 3.0e-253 878.6 660 67.6
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 1.1e-252 876.7 658 66.7
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 1.5e-252 876.3 642 68.8
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 1.9e-252 875.9 658 67.6
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 5.6e-252 874.4 664 66.9
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 9.5e-252 873.6 663 66.5
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 1.2e-251 873.2 647 68.6
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.6e-251 872.8 647 67.4
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 3.6e-251 871.7 659 66.9
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 1.0e-250 870.2 644 68.9
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 1.8e-250 869.4 651 67.6
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 4.0e-250 868.2 647 66.9
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 5.2e-250 867.8 649 66.4
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 5.2e-250 867.8 670 66.7
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 2.0e-249 865.9 658 66.9
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 5.8e-249 864.4 652 66.7
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 1.7e-248 862.8 660 66.5
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 1.7e-248 862.8 660 66.7
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 2.9e-248 862.1 663 66.7
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 2.9e-248 862.1 663 65.9
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 4.9e-248 861.3 663 65.8
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 6.4e-248 860.9 663 65.9
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 8.3e-248 860.5 652 65.3
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 9.2e-247 857.1 652 66.6
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 9.2e-247 857.1 659 66.0
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 2.7e-246 855.5 655 65.3
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 3.5e-246 855.1 653 66.5
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 3.0e-245 852.0 623 68.2
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 3.0e-245 852.0 644 67.7
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 3.0e-245 852.0 663 65.3
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 6.6e-245 850.9 653 66.3
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.5e-244 849.7 651 64.8
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 1.9e-244 849.4 654 65.7
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 3.3e-244 848.6 661 65.2
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 4.3e-244 848.2 663 67.0
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 7.3e-244 847.4 653 66.2
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 3.6e-243 845.1 664 64.0
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.4e-242 843.2 663 67.0
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 4.0e-242 841.6 650 66.0
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 5.2e-242 841.3 662 65.0
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 7.5e-241 837.4 663 64.0
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 3.7e-240 835.1 652 64.4
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 3.2e-239 832.0 655 65.8
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 3.2e-239 832.0 661 64.3
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 7.8e-238 827.4 659 64.5
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 1.7e-237 826.2 652 64.1
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 1.7e-237 826.2 652 64.1
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 8.6e-237 823.9 652 64.0
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 8.6e-237 823.9 663 64.0
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 1.1e-236 823.5 654 64.2
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.6e-235 818.5 642 64.2
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 6.2e-235 817.8 663 63.0
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 3.1e-234 815.5 642 65.1
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 3.1e-234 815.5 652 63.7
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 3.1e-234 815.5 648 63.9
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 8.9e-234 813.9 642 64.0
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 8.9e-234 813.9 652 63.8
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.6e-233 812.4 581 68.7
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 1.7e-232 809.7 670 63.9
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 6.4e-232 807.7 643 63.0
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.6e-227 793.1 659 61.6
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 3.6e-227 792.0 659 61.5
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 5.2e-226 788.1 652 61.5
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 6.9e-226 787.7 660 62.7
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 9.9e-225 783.9 618 64.1
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 4.9e-224 781.6 625 65.8
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 2.7e-222 775.8 663 60.8
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 5.1e-221 771.5 652 61.0
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.1e-220 770.4 652 60.9
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 3.3e-220 768.8 642 61.2
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 3.4e-217 758.8 652 60.0
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 4.5e-217 758.4 668 59.9
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 4.9e-216 755.0 652 60.1
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 1.4e-215 753.4 678 60.9
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 7.4e-204 714.5 561 64.9
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 6.9e-202 708.0 646 59.8
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 2.6e-201 706.1 522 68.0
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 9.0e-194 681.0 554 62.6
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.9e-191 673.3 618 59.4
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 5.1e-189 665.2 684 55.0
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 1.1e-188 664.1 442 74.0
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 8.2e-187 657.9 665 57.3
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 8.8e-181 637.9 654 55.8
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 8.5e-160 568.2 629 48.6
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 1.5e-159 567.4 494 58.5
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 3.4e-156 556.2 621 47.8
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 2.1e-150 537.0 649 47.0
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 2.0e-148 530.4 583 51.3
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 2.6e-148 530.0 661 44.3
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.4e-146 524.2 639 44.1
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 1.1e-114 418.3 657 37.4
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 2.4e-85 320.9 341 53.4
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 8.5e-75 285.8 231 60.6
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 1.2e-57 228.8 288 48.6
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 1.6e-44 185.3 121 72.7
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.1e-41 173.3 124 67.7
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 2.6e-39 167.9 107 75.7
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 4.4e-39 167.2 151 55.0
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 2.2e-38 164.9 107 74.8
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 4.8e-38 163.7 110 74.5
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 9.1e-37 159.5 272 37.5
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 5.9e-36 156.8 221 40.3
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.9e-35 154.5 157 52.2
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 8.0e-33 146.4 94 74.5
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 3.7e-30 137.5 171 48.0
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 9.2e-29 132.9 83 77.1
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.2e-28 132.5 131 53.4
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 2.0e-28 131.7 85 72.9
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.9e-28 130.2 156 46.2
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.9e-27 127.9 100 64.0
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 1.1e-26 125.9 79 75.9
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.9e-26 125.2 156 46.2
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 7.5e-23 113.2 92 63.0
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 9.5e-18 96.3 101 55.4
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 4.7e-17 94.0 101 52.5
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 1.1e-16 92.8 531 22.2
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 1.3e-14 85.9 54 77.8
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 4.9e-14 84.0 75 57.3
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 1.1e-13 82.8 48 81.2
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 1.4e-13 82.4 240 26.2
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.4e-08 65.9 84 44.0


User provided reference genes

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