Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 9.1e-307 1056.2 583 100.0
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.3e-111 407.9 623 50.1
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.8e-73 281.2 689 39.9
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.7e-71 274.6 733 36.7
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 5.5e-70 269.6 748 36.6
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 8.8e-68 262.3 725 36.7
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 2.2e-63 247.7 723 36.5
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 8.5e-63 245.7 723 35.7
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 8.5e-63 245.7 715 35.4
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.2e-61 241.9 782 36.2
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 3.6e-61 240.4 718 35.0
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 4.7e-61 240.0 658 36.3
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.3e-60 237.7 722 34.8
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.8e-60 236.1 737 34.6
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 9.8e-59 232.3 728 33.7
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 2.9e-55 220.7 681 36.3
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 4.0e-52 210.3 701 33.4
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 4.0e-52 210.3 699 33.5
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 5.2e-52 209.9 723 33.1
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 7.5e-51 206.1 712 33.8
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 2.8e-50 204.1 680 33.8
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 3.7e-50 203.8 681 35.8
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 6.3e-50 203.0 620 36.9
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 8.3e-50 202.6 621 38.5
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.4e-49 201.8 625 35.4
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 3.1e-49 200.7 723 32.6
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.1e-49 200.7 668 33.5
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 2.0e-48 198.0 701 32.5
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 7.8e-48 196.1 682 34.8
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 1.0e-47 195.7 678 33.6
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.0e-47 195.7 683 34.3
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.7e-47 194.9 630 34.8
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 2.9e-47 194.1 683 34.6
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 3.8e-47 193.7 629 35.0
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 8.6e-47 192.6 759 33.2
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 1.1e-46 192.2 662 35.0
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 1.1e-46 192.2 705 33.3
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.1e-46 192.2 708 34.2
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.3e-46 190.3 668 33.7
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 4.3e-46 190.3 703 33.0
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 4.3e-46 190.3 691 35.5
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 5.6e-46 189.9 615 33.0
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 5.6e-46 189.9 733 31.8
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 7.3e-46 189.5 750 31.1
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 9.5e-46 189.1 829 32.4
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 9.5e-46 189.1 719 33.4
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.6e-45 188.3 664 33.6
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.1e-45 188.0 640 32.8
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.8e-45 187.6 684 32.6
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.7e-45 186.8 673 32.5
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 6.1e-45 186.4 680 32.2
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 6.1e-45 186.4 718 33.3
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 1.0e-44 185.7 698 31.9
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.0e-44 185.7 712 31.9
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.2e-44 183.3 700 32.7
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 8.9e-44 182.6 726 30.6
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 8.9e-44 182.6 712 31.9
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.5e-43 181.8 689 32.9
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.0e-43 181.4 653 33.8
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.0e-43 181.4 651 35.0
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.6e-43 181.0 687 33.5
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.4e-43 180.6 759 31.1
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 5.7e-43 179.9 641 36.7
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 5.7e-43 179.9 664 34.9
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 7.5e-43 179.5 688 34.0
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 9.8e-43 179.1 638 35.1
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 9.8e-43 179.1 707 33.4
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 1.7e-42 178.3 707 33.1
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.1e-41 175.6 748 33.2
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-41 174.9 668 33.2
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.4e-41 174.5 598 36.6
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.2e-41 174.1 578 34.3
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 4.1e-41 173.7 675 34.7
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 4.1e-41 173.7 682 33.4
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 5.4e-41 173.3 621 32.0
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.2e-40 172.2 703 32.0
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 3.5e-40 170.6 669 31.7
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 3.5e-40 170.6 697 33.9
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.9e-40 169.9 695 32.5
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 5.9e-40 169.9 594 34.2
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 5.9e-40 169.9 709 32.3
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 7.8e-40 169.5 671 34.9
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.3e-39 168.7 600 34.3
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.7e-39 168.3 612 34.6
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.3e-39 167.9 647 31.1
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 3.9e-39 167.2 696 31.2
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 6.6e-39 166.4 731 32.0
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 8.6e-39 166.0 676 33.9
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 1.9e-38 164.9 650 32.6
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 2.5e-38 164.5 628 33.0
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.5e-38 164.5 671 32.9
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 9.5e-38 162.5 677 32.1
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.6e-37 161.8 703 31.9
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 2.1e-37 161.4 620 33.1
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.8e-37 161.0 464 33.8
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 4.7e-37 160.2 681 31.6
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 4.7e-37 160.2 647 33.8
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 6.8e-36 156.4 770 31.6
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.8e-36 156.4 506 34.4
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.4e-35 153.7 571 29.6
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 7.5e-35 152.9 668 31.7
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 7.5e-35 152.9 688 30.2
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 2.2e-34 151.4 612 32.0
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 4.9e-34 150.2 713 32.7
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 1.9e-33 148.3 639 32.6
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 7.0e-33 146.4 716 30.9
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.7e-32 144.4 562 29.7
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 3.5e-32 144.1 675 32.3
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 3.5e-32 144.1 649 31.7
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 4.6e-32 143.7 641 30.1
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 7.8e-32 142.9 667 28.6
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.3e-31 142.1 673 30.3
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 8.6e-31 139.4 562 28.8
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.5e-30 138.7 584 31.3
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 2.5e-30 137.9 593 29.3
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 3.3e-30 137.5 563 33.9
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 3.3e-30 137.5 523 30.8
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 5.6e-30 136.7 682 29.0
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 7.3e-30 136.3 594 33.2
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 2.8e-29 134.4 523 30.6
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.0e-28 130.6 767 29.9
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 6.8e-28 129.8 703 29.2
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 8.9e-28 129.4 701 32.5
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 2.6e-27 127.9 559 30.2
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 4.4e-27 127.1 678 28.9
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 5.8e-27 126.7 632 28.0
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 9.8e-27 125.9 654 31.7
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 1.7e-26 125.2 620 32.3
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.4e-25 122.1 697 31.1
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 2.4e-25 121.3 705 28.9
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 4.1e-25 120.6 594 31.0
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 4.1e-25 120.6 594 31.0
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.2e-24 119.0 423 38.1
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-24 119.0 466 34.8
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 1.0e-23 115.9 601 30.8
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.7e-23 115.2 621 29.8
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 2.3e-20 104.8 284 36.3
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 5.2e-20 103.6 437 30.7
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.2e-19 102.4 167 46.1
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.3e-18 99.0 684 30.0
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.1e-17 95.9 741 25.5
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 3.2e-17 94.4 766 27.3
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.6e-16 92.0 658 25.8
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 1.0e-15 89.4 142 43.7
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.3e-15 88.2 656 27.9
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.6e-13 82.0 702 26.4
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.1e-13 81.6 676 26.9
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.1e-12 79.3 304 33.9
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 1.1e-12 79.3 122 43.4
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 5.2e-12 77.0 176 39.2
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.5e-11 75.5 317 29.7
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 2.6e-11 74.7 491 28.9
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 5.8e-11 73.6 203 35.5
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 9.9e-11 72.8 592 27.7
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.7e-10 72.0 166 36.7
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 4.9e-10 70.5 773 24.2
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 1.1e-09 69.3 171 37.4
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.9e-09 68.6 103 46.6
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 2.1e-08 65.1 94 44.7
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.3e-07 61.6 370 27.3
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 1.1e-06 59.3 344 27.6
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 2.5e-06 58.2 152 38.8


User provided reference genes

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