Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 1.5e-164 582.8 297 100.0
SGA_v2.0_scaffold130G34346 Striga asiatica HOM05D010484 ORTHO05D001329 1.1e-87 327.4 318 62.3
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 4.2e-82 308.9 310 59.7
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 1.4e-61 240.7 337 51.3
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 8.0e-49 198.4 319 45.1
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 3.9e-48 196.1 312 44.6
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 7.0e-45 185.3 286 43.4
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 9.1e-45 184.9 287 45.6
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 5.5e-42 175.6 294 44.2
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 2.2e-38 163.7 341 38.7
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 2.7e-36 156.8 328 39.0
Oeu025352.2 Olea europaea HOM05D001501 ORTHO05D001329 1.5e-34 151.0 203 49.3
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 1.5e-34 151.0 306 39.2
MSTRG.15244 Avicennia marina HOM05D010484 ORTHO05D010242 1.6e-33 147.5 292 38.4
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 6.1e-33 145.6 320 35.9
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 1.2e-31 141.4 298 35.6
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 3.4e-31 139.8 321 36.1
SalBow8G4768 Salvia bowleyana HOM05D010484 ORTHO05D010242 4.4e-31 139.4 300 41.3
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 6.3e-30 135.6 327 35.8
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 8.3e-30 135.2 321 35.8
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 3.1e-29 133.3 329 34.0
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 9.1e-29 131.7 338 36.1
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 1.2e-28 131.3 331 35.0
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 4.5e-28 129.4 329 35.6
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 4.5e-28 129.4 356 32.3
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 7.7e-28 128.6 322 33.5
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.7e-27 127.5 322 35.1
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 2.3e-27 127.1 313 36.7
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 8.6e-27 125.2 330 36.4
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 1.9e-26 124.0 303 34.3
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.9e-26 124.0 303 33.7
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.5e-26 123.6 305 33.8
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 4.2e-26 122.9 323 34.1
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 4.2e-26 122.9 343 33.8
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 7.2e-26 122.1 303 36.6
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 9.5e-26 121.7 330 36.1
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 3.6e-25 119.8 296 37.2
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 3.6e-25 119.8 337 32.6
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 3.6e-25 119.8 306 37.3
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 1.0e-24 118.2 331 35.3
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 1.4e-24 117.9 325 34.2
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 2.3e-24 117.1 334 34.1
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 5.2e-24 115.9 328 34.1
PGR031G3944 Punica granatum HOM05D001501 ORTHO05D001329 6.8e-24 115.5 364 33.5
SGA_v2.0_scaffold34G13793 Striga asiatica HOM05D010484 ORTHO05D010242 6.8e-24 115.5 240 38.3
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 8.9e-24 115.2 340 34.7
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 1.5e-23 114.4 331 33.5
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 1.5e-23 114.4 313 32.3
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 2.6e-23 113.6 263 37.6
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 2.6e-23 113.6 329 32.2
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 2.6e-23 113.6 312 34.0
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 5.7e-23 112.5 340 32.6
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 9.8e-23 111.7 308 32.5
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 1.1e-21 108.2 383 31.3
Aqoxy1G02259 Aquilegia oxysepala HOM05D001501 ORTHO05D001329 3.2e-21 106.7 357 30.3
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 1.2e-20 104.8 320 33.1
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 2.0e-20 104.0 304 35.2
PGSC0003DMG400012438 Solanum tuberosum HOM05D010484 ORTHO05D010242 3.5e-20 103.2 198 38.4
SGA_v2.0_scaffold21G09335 Striga asiatica HOM05D001501 ORTHO05D001329 5.9e-20 102.4 121 52.1
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 5.9e-20 102.4 173 45.1
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 1.0e-19 101.7 308 34.1
MBI06_g00806_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 2.3e-19 100.5 310 30.6
Solyc07g062740.4 Solanum lycopersicum HOM05D010484 ORTHO05D010242 5.0e-19 99.4 130 48.5
Sopen07g030970 Solanum pennellii HOM05D010484 ORTHO05D010242 5.0e-19 99.4 130 48.5
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 6.6e-19 99.0 337 32.0
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 6.6e-19 99.0 358 29.3
CiPaw.11G166600 Carya illinoinensis HOM05D001501 ORTHO05D001329 1.5e-18 97.8 325 31.1
arahy.Tifrunner.gnm1.ann1.14Q3ET Arachis hypogaea HOM05D001501 ORTHO05D001329 2.5e-18 97.1 333 30.6
PSO675G3629 Papaver somniferum HOM05D001501 ORTHO05D001329 2.5e-18 97.1 283 36.0
SGA_v2.0_scaffold239G44034 Striga asiatica HOM05D001501 ORTHO05D001329 7.3e-18 95.5 130 48.5
Sed0026243 Sechium edule HOM05D001501 ORTHO05D001329 9.5e-18 95.1 104 51.9
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 2.8e-17 93.6 278 32.4
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 2.8e-17 93.6 191 38.2
EL10Ac4g08261 Beta vulgaris HOM05D001501 ORTHO05D001329 1.0e-16 91.7 329 31.0
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 1.0e-16 91.7 340 30.9
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 1.4e-16 91.3 245 35.9
MBI07_g01326_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 2.3e-16 90.5 122 44.3
MBI07_g38899_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 2.3e-16 90.5 122 44.3
PSO541G6205 Papaver somniferum HOM05D001501 ORTHO05D001329 4.0e-16 89.7 263 34.6
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 8.9e-16 88.6 362 30.4
AUR62019490 Chenopodium quinoa HOM05D001501 ORTHO05D001329 1.2e-15 88.2 145 40.7
AUR62036146 Chenopodium quinoa HOM05D001501 ORTHO05D001329 1.2e-15 88.2 147 40.1
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 3.4e-15 86.7 360 29.2
Sed0013458 Sechium edule HOM05D001501 ORTHO05D001329 3.4e-15 86.7 104 49.0
unitig_747.g21580 Utricularia gibba HOM05D010484 ORTHO05D010242 7.5e-15 85.5 285 33.0
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 1.7e-14 84.3 359 29.2
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 2.9e-14 83.6 360 29.7
unitig_37.g12566 Utricularia gibba HOM05D001501 ORTHO05D001329 6.4e-14 82.4 149 38.3
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 8.3e-14 82.0 363 29.2
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 8.3e-14 82.0 360 29.7
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 8.3e-14 82.0 360 29.7
Lsat_1_v5_gn_5_127461 Lactuca sativa HOM05D016023 ORTHO05D010242 1.4e-13 81.3 296 30.1
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 1.9e-13 80.9 347 30.8
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 4.1e-13 79.7 357 30.5
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 7.0e-13 79.0 317 27.1
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 9.2e-13 78.6 358 27.9
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 1.3e-11 74.7 366 27.9
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 1.7e-11 74.3 357 28.9
Sc16g0007300 Simmondsia chinensis HOM05D001501 ORTHO05D001329 3.9e-11 73.2 299 29.4
HanXRQChr10g0302501 Helianthus annuus HOM05D016023 ORTHO05D010242 5.0e-11 72.8 341 28.2
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 8.6e-11 72.0 245 32.7
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 8.6e-11 72.0 200 34.0
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 1.1e-10 71.6 343 28.6
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 1.1e-10 71.6 332 30.1
DCAR_017119 Daucus carota HOM05D010484 ORTHO05D010242 4.3e-10 69.7 289 28.4
Actinidia18779 Actinidia chinensis HOM05D010484 ORTHO05D001329 5.6e-10 69.3 313 28.4
ECA234G3280 Erigeron canadensis HOM05D016023 ORTHO05D010242 7.3e-10 68.9 320 29.1
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 1.6e-09 67.8 335 26.6
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 2.1e-09 67.4 359 27.9
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 6.2e-09 65.9 274 32.1
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 1.1e-08 65.1 351 27.4
Lsat_1_v5_gn_9_98300 Lactuca sativa HOM05D016023 ORTHO05D010242 1.4e-08 64.7 229 31.4
HanXRQChr10g0317081 Helianthus annuus HOM05D016023 ORTHO05D010242 2.3e-08 63.9 218 29.4
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 4.0e-08 63.2 343 24.8
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 6.8e-08 62.4 345 24.9
HanXRQChr10g0317071 Helianthus annuus HOM05D016023 ORTHO05D010242 6.8e-08 62.4 188 31.9
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 8.9e-08 62.0 345 25.5
ECA240G0649 Erigeron canadensis HOM05D016023 ORTHO05D010242 8.9e-08 62.0 210 29.0
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 1.5e-07 61.2 345 25.5
Glyma.15G085500 Glycine max HOM05D001501 ORTHO05D001329 2.0e-07 60.8 130 33.8
HanXRQChr13g0391171 Helianthus annuus HOM05D016023 ORTHO05D010242 2.0e-07 60.8 220 31.8
Sed0016466 Sechium edule HOM05D001501 ORTHO05D001329 2.6e-07 60.5 123 37.4
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 4.4e-07 59.7 345 26.7
VMungo0540G0954 Vigna mungo HOM05D001501 ORTHO05D001329 4.4e-07 59.7 219 27.9
Cc05_g08550 Coffea canephora HOM05D001501 ORTHO05D001329 7.5e-07 58.9 214 29.0
Nn1g04509 Nelumbo nucifera HOM05D001501 ORTHO05D001329 7.5e-07 58.9 161 32.9
Migut.M00772 Erythranthe guttata HOM05D016023 ORTHO05D010242 9.8e-07 58.5 182 32.4
Glyma.13G226900 Glycine max HOM05D001501 ORTHO05D001329 9.8e-07 58.5 133 34.6
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 1.3e-06 58.2 347 25.9
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 1.3e-06 58.2 245 31.4
MBI06_g36539_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 1.3e-06 58.2 135 37.0
Os01g0241000 Oryza sativa ssp. japonica HOM05D001501 ORTHO05D001329 1.3e-06 58.2 131 35.9
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 1.3e-06 58.2 342 26.9
SMO165G0039 Selaginella moellendorffii HOM05D001501 ORTHO05D001329 1.3e-06 58.2 103 40.8
Atru.chr6.2761 Acer truncatum HOM05D001501 ORTHO05D001329 2.2e-06 57.4 152 33.6
Aa31LG1G24510 Aethionema arabicum HOM05D001501 ORTHO05D001329 2.2e-06 57.4 218 28.0
ATR0012G043 Amborella trichopoda HOM05D001501 ORTHO05D001329 2.9e-06 57.0 142 31.7
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 2.9e-06 57.0 349 27.5
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 2.9e-06 57.0 349 27.5
Manes.17G058500 Manihot esculenta HOM05D001501 ORTHO05D001329 3.7e-06 56.6 184 33.2
Eucgr.L01560 Eucalyptus grandis HOM05D001501 ORTHO05D001329 8.3e-06 55.5 208 29.8
MBI14_g25894_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 8.3e-06 55.5 117 35.9
Phvul.002G240700 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 8.3e-06 55.5 148 33.1


User provided reference genes

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