Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 0.0e+00 1154.4 600 100.0
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 1.4e-36 158.7 343 37.3
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 3.1e-36 157.5 343 38.5
SGA_v2.0_scaffold453G51880 Striga asiatica HOM05D000959 ORTHO05D000775 4.5e-35 153.7 154 54.5
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 8.6e-34 149.4 347 36.6
SGA_v2.0_scaffold83G26437 Striga asiatica HOM05D000006 ORTHO05D000001 1.5e-33 148.7 147 53.7
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 2.8e-32 144.4 340 37.4
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 1.4e-31 142.1 352 36.1
SGA_v2.0_scaffold185G40083 Striga asiatica HOM05D002303 ORTHO05D012836 5.2e-31 140.2 148 52.7
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 6.8e-31 139.8 342 35.7
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 6.8e-31 139.8 354 35.9
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.2e-30 139.0 342 36.5
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 7.5e-30 136.3 354 35.3
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 1.7e-29 135.2 345 35.1
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 1.7e-29 135.2 338 34.9
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 2.9e-29 134.4 361 33.5
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 3.7e-29 134.0 345 34.2
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 8.3e-29 132.9 347 34.9
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 8.3e-29 132.9 343 34.4
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 2.4e-28 131.3 343 33.8
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 5.4e-28 130.2 354 34.5
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 7.0e-28 129.8 354 34.5
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 7.0e-28 129.8 354 34.5
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 7.0e-28 129.8 350 34.0
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 7.0e-28 129.8 355 33.8
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 1.6e-27 128.6 349 33.0
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 2.0e-27 128.3 319 34.8
SGA_v2.0_scaffold144G35972 Striga asiatica HOM05D000942 ORTHO05D012836 2.7e-27 127.9 87 66.7
SGA_v2.0_scaffold408G51088 Striga asiatica HOM05D006022 ORTHO05D007649 2.7e-27 127.9 155 50.3
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 2.7e-27 127.9 362 32.3
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 4.6e-27 127.1 328 34.8
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 5.9e-27 126.7 352 33.5
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 5.9e-27 126.7 342 34.8
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 5.9e-27 126.7 354 33.9
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 5.9e-27 126.7 345 34.2
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 7.8e-27 126.3 349 33.8
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 7.8e-27 126.3 349 33.8
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 1.0e-26 125.9 366 32.8
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 1.0e-26 125.9 341 33.7
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 2.9e-26 124.4 338 34.3
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 2.9e-26 124.4 352 33.0
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 5.0e-26 123.6 337 34.4
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 1.1e-25 122.5 346 34.1
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 1.5e-25 122.1 342 32.5
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.9e-25 121.7 357 33.6
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.5e-25 121.3 354 33.3
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 2.5e-25 121.3 350 32.3
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 3.3e-25 120.9 342 32.7
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 3.3e-25 120.9 357 33.1
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 3.3e-25 120.9 357 33.1
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 3.3e-25 120.9 329 33.7
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 5.6e-25 120.2 333 33.6
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 5.6e-25 120.2 333 33.6
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 5.6e-25 120.2 351 33.9
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 2.1e-24 118.2 352 32.7
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 2.1e-24 118.2 352 33.0
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 2.1e-24 118.2 78 75.6
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 2.8e-24 117.9 348 33.3
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 3.6e-24 117.5 340 34.7
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 4.7e-24 117.1 348 32.5
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 6.1e-24 116.7 354 32.5
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 1.4e-23 115.5 335 32.8
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.8e-23 115.2 312 33.0
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 3.1e-23 114.4 344 31.7
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 3.1e-23 114.4 302 32.5
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 4.0e-23 114.0 76 77.6
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 6.8e-23 113.2 350 32.0
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 8.9e-23 112.8 337 31.8
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 8.9e-23 112.8 337 31.8
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 1.2e-22 112.5 350 32.3
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.2e-22 112.5 344 33.1
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 1.5e-22 112.1 136 49.3
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 2.0e-22 111.7 339 31.0
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 3.4e-22 110.9 348 31.3
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 3.4e-22 110.9 342 32.5
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 3.4e-22 110.9 348 31.9
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 3.4e-22 110.9 74 78.4
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 9.8e-22 109.4 348 31.6
SGA_v2.0_scaffold71G23746 Striga asiatica HOM05D000234 ORTHO05D012836 1.3e-21 109.0 70 71.4
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 1.7e-21 108.6 76 71.1
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 1.7e-21 108.6 76 71.1
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 3.7e-21 107.5 74 74.3
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 6.4e-21 106.7 75 70.7
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 6.4e-21 106.7 342 30.7
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 6.4e-21 106.7 352 30.4
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 6.4e-21 106.7 355 32.1
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 1.1e-20 105.9 77 67.5
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 1.1e-20 105.9 75 74.7
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 1.1e-20 105.9 342 31.0
SGA_v2.0_scaffold23G10127 Striga asiatica HOM05D000234 ORTHO05D012836 1.1e-20 105.9 96 56.2
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 1.9e-20 105.1 74 73.0
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 2.4e-20 104.8 68 76.5
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 2.4e-20 104.8 354 31.4
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 2.4e-20 104.8 77 68.8
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 3.2e-20 104.4 77 72.7
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 3.2e-20 104.4 77 72.7
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 3.2e-20 104.4 77 72.7
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 5.4e-20 103.6 77 70.1
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 5.4e-20 103.6 77 67.5
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 7.0e-20 103.2 75 70.7
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 7.0e-20 103.2 354 31.4
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 7.0e-20 103.2 336 29.8
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 1.2e-19 102.4 364 30.5
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 1.6e-19 102.1 70 71.4
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 1.6e-19 102.1 75 70.7
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 1.6e-19 102.1 363 31.1
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 3.5e-19 100.9 280 34.6
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 6.0e-19 100.1 77 70.1
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 1.3e-18 99.0 70 68.6
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 1.3e-18 99.0 348 31.0
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 1.3e-18 99.0 78 69.2
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 1.7e-18 98.6 67 74.6
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 6.6e-18 96.7 365 29.3
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 8.6e-18 96.3 366 30.6
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 1.1e-17 95.9 356 30.1
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 1.5e-17 95.5 364 30.2
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 1.5e-17 95.5 345 28.7
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 1.9e-17 95.1 72 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 3.3e-17 94.4 70 64.3
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 3.3e-17 94.4 345 28.7
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 5.6e-17 93.6 357 28.9
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 1.2e-16 92.4 108 53.7
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 2.8e-16 91.3 363 29.5
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 3.1e-15 87.8 360 29.4
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 3.1e-15 87.8 360 29.4
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 6.8e-15 86.7 74 60.8
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 1.2e-14 85.9 74 59.5
SGA_v2.0_scaffold169G38721 Striga asiatica HOM05D002942 ORTHO05D003270 1.3e-13 82.4 52 73.1
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 8.3e-13 79.7 75 54.7
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 2.3e-10 71.6 75 48.0
SGA_v2.0_scaffold152G36792 Striga asiatica HOM05D001336 ORTHO05D012836 3.0e-10 71.2 127 36.2
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 1.5e-09 68.9 114 46.5
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 3.3e-09 67.8 124 43.5
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 4.7e-08 63.9 60 50.0
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 8.1e-08 63.2 73 54.8
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 6.8e-07 60.1 116 42.2
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 7.6e-06 56.6 47 68.1
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 9.9e-06 56.2 58 55.2


User provided reference genes

Program Settings