Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23683 Striga asiatica HOM05D002950 ORTHO05D402189 6.8e-62 240.4 110 100.0
SGA_v2.0_scaffold130G34353 Striga asiatica HOM05D002950 ORTHO05D006701 9.9e-13 77.0 86 47.7
Cc00_g24740 Coffea canephora HOM05D002950 ORTHO05D006701 1.4e-11 73.2 98 43.9
Cc09_g01420 Coffea canephora HOM05D002950 ORTHO05D006701 1.4e-11 73.2 98 43.9
Sabra11G0006700 Salix brachista HOM05D002950 ORTHO05D006701 3.2e-11 72.0 105 38.1
CSS0003009 Camellia sinensis var. sinensis HOM05D002950 ORTHO05D006701 5.4e-11 71.2 105 40.0
Sabra04G0004200 Salix brachista HOM05D002950 ORTHO05D006701 7.1e-11 70.9 102 36.3
Potri.011G007900 Populus trichocarpa HOM05D002950 ORTHO05D006701 1.2e-10 70.1 102 37.3
Hma1.2p1_0298F.1_g117630 Hydrangea macrophylla HOM05D002950 ORTHO05D006701 2.1e-10 69.3 102 40.2
Glyma.15G110400 Glycine max HOM05D002950 ORTHO05D006701 2.7e-10 68.9 100 39.0
Gorai.011G012600 Gossypium raimondii HOM05D002950 ORTHO05D006701 3.5e-10 68.6 106 39.6
Lj6g0020889 Lotus japonicus HOM05D002950 ORTHO05D006701 3.5e-10 68.6 102 40.2
C05p11240 Brassica napus HOM05D002950 ORTHO05D006701 4.6e-10 68.2 110 38.2
BolC5t29872H Brassica oleracea HOM05D002950 ORTHO05D006701 4.6e-10 68.2 110 38.2
Cpa.g.sc152.37 Carica papaya HOM05D002950 ORTHO05D006701 6.0e-10 67.8 103 36.9
Nn1g03455 Nelumbo nucifera HOM05D002950 ORTHO05D006701 6.0e-10 67.8 104 36.5
Potri.004G007400 Populus trichocarpa HOM05D002950 ORTHO05D006701 6.0e-10 67.8 102 37.3
THA.LOC104809485 Tarenaya hassleriana HOM05D002950 ORTHO05D006701 6.0e-10 67.8 96 41.7
Lj1A1233T64 Lonicera japonica HOM05D002950 ORTHO05D006701 7.8e-10 67.4 106 40.6
Gohir.A10G011900 Gossypium hirsutum HOM05D002950 ORTHO05D006701 1.3e-09 66.6 106 38.7
Sabra11G0009300 Salix brachista HOM05D002950 ORTHO05D006701 1.3e-09 66.6 105 36.2
Dinv13926 Davidia involucrata HOM05D002950 ORTHO05D006701 1.7e-09 66.2 104 40.4
Duzib160G0808 Durio zibethinus HOM05D002950 ORTHO05D006701 1.7e-09 66.2 108 40.7
Duzib192G0016 Durio zibethinus HOM05D002950 ORTHO05D006701 1.7e-09 66.2 110 36.4
Thhalv10008171m.g Eutrema salsugineum HOM05D002950 ORTHO05D006701 1.7e-09 66.2 96 39.6
Sc17g0007510 Simmondsia chinensis HOM05D002950 ORTHO05D006701 1.7e-09 66.2 99 36.4
AL1G23110 Arabidopsis lyrata HOM05D002950 ORTHO05D006701 2.3e-09 65.9 96 39.6
AT1G11915 Arabidopsis thaliana HOM05D002950 ORTHO05D006701 2.3e-09 65.9 107 38.3
A06p09520 Brassica napus HOM05D002950 ORTHO05D006701 2.3e-09 65.9 90 41.1
BraA06t24142Z Brassica rapa HOM05D002950 ORTHO05D006701 2.3e-09 65.9 90 41.1
CARHR012250 Cardamine hirsuta HOM05D002950 ORTHO05D006701 2.3e-09 65.9 96 39.6
Lalb_Chr15g0087701 Lupinus albus HOM05D002950 ORTHO05D006701 2.3e-09 65.9 98 38.8
Phvul.003G080900 Phaseolus vulgaris HOM05D002950 ORTHO05D006701 2.3e-09 65.9 109 36.7
Prupe.4G017500 Prunus persica HOM05D002950 ORTHO05D006701 2.3e-09 65.9 105 34.3
Sp1g10580 Schrenkiella parvula HOM05D002950 ORTHO05D006701 2.3e-09 65.9 96 39.6
Thecc.06G225000 Theobroma cacao HOM05D002950 ORTHO05D006701 3.0e-09 65.5 81 39.5
TPR.G37104 Trifolium pratense HOM05D002950 ORTHO05D006701 3.0e-09 65.5 106 36.8
Cfa000185 Carpinus fangiana HOM05D002950 ORTHO05D006701 3.9e-09 65.1 76 43.4
Gohir.A06G206400 Gossypium hirsutum HOM05D002950 ORTHO05D006701 3.9e-09 65.1 103 40.8
Gohir.D06G215200 Gossypium hirsutum HOM05D002950 ORTHO05D006701 3.9e-09 65.1 103 40.8
VMungo0540G1806 Vigna mungo HOM05D002950 ORTHO05D006701 3.9e-09 65.1 98 38.8
VMungo1215G3037 Vigna mungo HOM05D002950 ORTHO05D006701 3.9e-09 65.1 109 36.7
arahy.Tifrunner.gnm1.ann1.C5RAU0 Arachis hypogaea HOM05D002950 ORTHO05D006701 5.1e-09 64.7 101 34.7
arahy.Tifrunner.gnm1.ann1.QTWL09 Arachis hypogaea HOM05D002950 ORTHO05D006701 5.1e-09 64.7 101 34.7
Ciclev10015825m.g Citrus clementina HOM05D002950 ORTHO05D006701 5.1e-09 64.7 101 37.6
Phvul.006G147700 Phaseolus vulgaris HOM05D002950 ORTHO05D006701 5.1e-09 64.7 97 37.1
Solyc02g080900.3 Solanum lycopersicum HOM05D002950 ORTHO05D006701 5.1e-09 64.7 101 36.6
Sopen02g025590 Solanum pennellii HOM05D002950 ORTHO05D006701 5.1e-09 64.7 101 36.6
Gorai.010G251200 Gossypium raimondii HOM05D002950 ORTHO05D006701 6.6e-09 64.3 103 40.8
PGSC0003DMG400016467 Solanum tuberosum HOM05D002950 ORTHO05D006701 6.6e-09 64.3 105 36.2
Aqoxy1G03068 Aquilegia oxysepala HOM05D002950 ORTHO05D006701 8.7e-09 63.9 106 36.8
Haze_06837 Corylus avellana HOM05D002950 ORTHO05D006701 8.7e-09 63.9 76 42.1
TWI63G0535 Tripterygium wilfordii HOM05D002950 ORTHO05D006701 8.7e-09 63.9 108 36.1
Atru.chr10.2263 Acer truncatum HOM05D002950 ORTHO05D006701 1.1e-08 63.5 80 42.5
Carub.0001s1160 Capsella rubella HOM05D002950 ORTHO05D006701 1.1e-08 63.5 90 40.0
CiPaw.09G095500 Carya illinoinensis HOM05D002950 ORTHO05D006701 1.1e-08 63.5 97 41.2
Glyma.17G011300 Glycine max HOM05D002950 ORTHO05D006701 1.1e-08 63.5 98 38.8
Medtr2g023970 Medicago truncatula HOM05D002950 ORTHO05D006701 1.5e-08 63.2 101 36.6
GSVIVG01012680001 Vitis vinifera HOM05D002950 ORTHO05D006701 1.5e-08 63.2 83 39.8
CAN.G1014.25 Capsicum annuum HOM05D002950 ORTHO05D006701 1.9e-08 62.8 106 35.8
DCAR_004234 Daucus carota HOM05D002950 ORTHO05D006701 1.9e-08 62.8 98 38.8
Gohir.D06G156200 Gossypium hirsutum HOM05D002950 ORTHO05D006701 1.9e-08 62.8 100 37.0
Actinidia26894 Actinidia chinensis HOM05D002950 ORTHO05D006701 2.5e-08 62.4 96 37.5
Glyma.07G262800 Glycine max HOM05D002950 ORTHO05D006701 2.5e-08 62.4 99 36.4
HanXRQChr16g0516971 Helianthus annuus HOM05D002950 ORTHO05D006701 2.5e-08 62.4 81 42.0
Nitab4.5_0005781g0010 Nicotiana tabacum HOM05D002950 ORTHO05D006701 2.5e-08 62.4 105 36.2
Migut.H01951 Erythranthe guttata HOM05D002950 ORTHO05D006701 3.3e-08 62.0 79 40.5
Gorai.010G182600 Gossypium raimondii HOM05D002950 ORTHO05D006701 3.3e-08 62.0 100 37.0
Manes.17G028900 Manihot esculenta HOM05D002950 ORTHO05D006701 3.3e-08 62.0 102 38.2
SalBow7G4389 Salvia bowleyana HOM05D002950 ORTHO05D006701 3.3e-08 62.0 82 37.8
TAR627G0195 Trochodendron aralioides HOM05D002950 ORTHO05D006701 3.3e-08 62.0 81 40.7
Eucgr.E04010 Eucalyptus grandis HOM05D002950 ORTHO05D006701 4.3e-08 61.6 84 39.3
MD00G1202600 Malus domestica HOM05D002950 ORTHO05D006701 4.3e-08 61.6 100 36.0
MD10G1324600 Malus domestica HOM05D002950 ORTHO05D006701 4.3e-08 61.6 100 36.0
Nitab4.5_0000005g0180 Nicotiana tabacum HOM05D002950 ORTHO05D006701 4.3e-08 61.6 87 39.1
vmacro03674 Vaccinium macrocarpon HOM05D002950 ORTHO05D006701 4.3e-08 61.6 105 36.2
Nitab4.5_0001409g0060 Nicotiana tabacum HOM05D002950 ORTHO05D006701 5.6e-08 61.2 105 34.3
PGR142G0305 Punica granatum HOM05D002950 ORTHO05D006701 5.6e-08 61.2 83 39.8
Ca_21068_v3 Cicer arietinum L. HOM05D002950 ORTHO05D006701 7.3e-08 60.8 98 36.7
Gohir.A06G150000 Gossypium hirsutum HOM05D002950 ORTHO05D006701 7.3e-08 60.8 100 36.0
Rhsim13G0151800 Rhododendron simsii HOM05D002950 ORTHO05D006701 7.3e-08 60.8 80 38.8
TPR.G13032 Trifolium pratense HOM05D002950 ORTHO05D006701 7.3e-08 60.8 101 35.6
CANSAT56G1058 Cannabis sativa HOM05D002950 ORTHO05D006701 9.6e-08 60.5 99 36.4
Lalb_Chr20g0118861 Lupinus albus HOM05D002950 ORTHO05D006701 9.6e-08 60.5 113 35.4
MSTRG.12897 Avicennia marina HOM05D002950 ORTHO05D006701 1.3e-07 60.1 97 36.1
Ca_00681_v3 Cicer arietinum L. HOM05D002950 ORTHO05D006701 1.3e-07 60.1 100 34.0
Medtr4g132450 Medicago truncatula HOM05D002950 ORTHO05D006701 1.3e-07 60.1 105 32.4
BcaB02g06445 Brassica carinata HOM05D002950 ORTHO05D006701 1.6e-07 59.7 80 40.0
RcHm_v2.0_Chr5g0002541 Rosa chinensis HOM05D002950 ORTHO05D006701 1.6e-07 59.7 88 38.6
TWI38G0503 Tripterygium wilfordii HOM05D002950 ORTHO05D006701 1.6e-07 59.7 86 37.2
Nn1g07219 Nelumbo nucifera HOM05D002950 ORTHO05D006701 2.8e-07 58.9 107 36.4
MD05G1349900 Malus domestica HOM05D002950 ORTHO05D006701 3.6e-07 58.5 84 36.9
MELO3C002430.2 Cucumis melo HOM05D002950 ORTHO05D006701 6.2e-07 57.8 101 35.6
Peaxi162Scf00178g01014 Petunia axillaris HOM05D002950 ORTHO05D006701 6.2e-07 57.8 80 37.5
MBI07_g09093_MAGBIO Magnolia biondii HOM05D002950 ORTHO05D006701 8.1e-07 57.4 104 36.5
AUR62012740 Chenopodium quinoa HOM05D002950 ORTHO05D006701 1.1e-06 57.0 80 38.8
ECA234G0282 Erigeron canadensis HOM05D002950 ORTHO05D006701 1.1e-06 57.0 82 37.8
Lsat_1_v5_gn_4_59300 Lactuca sativa HOM05D002950 ORTHO05D006701 1.1e-06 57.0 98 35.7
Manes.16G004000 Manihot esculenta HOM05D002950 ORTHO05D006701 1.1e-06 57.0 101 35.6
ATR0585G093 Amborella trichopoda HOM05D002950 ORTHO05D006701 1.4e-06 56.6 93 32.3
ClCG03G004520 Citrullus lanatus HOM05D002950 ORTHO05D006701 1.4e-06 56.6 102 35.3
FvH4_3g01690 Fragaria vesca HOM05D002950 ORTHO05D006701 1.4e-06 56.6 83 36.1
FAN21G2270 Fragaria x ananassa HOM05D002950 ORTHO05D006701 1.8e-06 56.2 76 38.2
FAN25G0098 Fragaria x ananassa HOM05D002950 ORTHO05D006701 1.8e-06 56.2 76 38.2
AUR62021916 Chenopodium quinoa HOM05D002950 ORTHO05D006701 2.4e-06 55.8 102 35.3
Psat1g178880 Pisum sativum HOM05D002950 ORTHO05D006701 2.4e-06 55.8 101 33.7
Sed0007514 Sechium edule HOM05D002950 ORTHO05D006701 2.4e-06 55.8 85 37.6
CDE07G1520 Ceratophyllum demersum HOM05D002950 ORTHO05D006701 3.1e-06 55.5 105 33.3
MELO3C007410.2 Cucumis melo HOM05D002950 ORTHO05D006701 3.1e-06 55.5 84 35.7
CsaV3_1G010400 Cucumis sativus L. HOM05D002950 ORTHO05D006701 3.1e-06 55.5 101 34.7
Sed0013175 Sechium edule HOM05D002950 ORTHO05D006701 3.1e-06 55.5 111 32.4
Ah.14g087900 Amaranthus hybridus HOM05D002950 ORTHO05D006701 4.0e-06 55.1 97 34.0
ClCG01G021760 Citrullus lanatus HOM05D002950 ORTHO05D006701 4.0e-06 55.1 84 38.1
PSO210G6869 Papaver somniferum HOM05D002950 ORTHO05D006701 4.0e-06 55.1 106 32.1
PSO832G0216 Papaver somniferum HOM05D002950 ORTHO05D006701 5.3e-06 54.7 106 32.1
Psat4g005680 Pisum sativum HOM05D002950 ORTHO05D006701 5.3e-06 54.7 85 35.3


User provided reference genes

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