Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 4.7e-171 604.4 290 100.0
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 3.6e-70 269.2 293 51.2
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 1.2e-57 227.6 294 45.9
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 4.0e-53 212.6 289 40.8
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 8.9e-53 211.5 258 45.7
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 5.7e-52 208.8 299 39.1
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 6.4e-51 205.3 293 37.9
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 2.0e-49 200.3 282 39.7
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 1.0e-48 198.0 240 44.6
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 1.7e-48 197.2 284 41.9
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.3e-48 196.8 284 41.5
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.3e-48 196.8 284 41.9
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 2.8e-46 189.9 247 42.1
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 8.0e-46 188.3 278 40.3
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 1.8e-45 187.2 280 40.0
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 5.2e-45 185.7 236 42.8
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 1.2e-44 184.5 280 38.9
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 2.6e-44 183.3 276 38.8
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 3.7e-43 179.5 287 41.1
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 3.7e-43 179.5 298 37.6
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 8.3e-43 178.3 309 38.5
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 1.1e-42 177.9 244 41.0
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 1.9e-42 177.2 306 36.9
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 2.4e-42 176.8 294 36.7
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 2.4e-42 176.8 269 39.8
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 7.0e-42 175.3 291 38.5
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 1.2e-41 174.5 239 41.8
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 4.6e-41 172.6 309 35.3
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 7.8e-41 171.8 261 39.5
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 1.0e-40 171.4 280 36.8
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 3.0e-40 169.9 298 34.6
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 3.0e-40 169.9 303 37.6
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 6.6e-40 168.7 284 36.6
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 6.6e-40 168.7 267 35.2
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 8.6e-40 168.3 271 39.5
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 3.3e-39 166.4 246 38.6
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 4.3e-39 166.0 245 38.4
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 5.6e-39 165.6 265 35.1
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 1.2e-38 164.5 281 36.7
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 2.8e-38 163.3 278 36.0
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 2.8e-38 163.3 254 36.6
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.6e-38 162.9 286 33.6
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 6.2e-38 162.2 252 39.3
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 1.4e-37 161.0 258 36.4
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 1.8e-37 160.6 302 36.8
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 1.2e-36 157.9 247 38.9
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 1.5e-36 157.5 276 33.3
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 2.0e-36 157.1 223 39.9
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 3.4e-36 156.4 331 32.9
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 9.8e-36 154.8 235 37.4
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 1.3e-35 154.5 262 35.5
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 1.7e-35 154.1 343 32.1
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 1.7e-35 154.1 247 39.7
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 6.4e-35 152.1 288 31.6
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 1.4e-34 151.0 261 35.6
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 1.2e-33 147.9 247 37.7
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 1.6e-33 147.5 264 36.7
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 2.1e-33 147.1 296 32.4
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 2.7e-33 146.7 294 32.0
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.7e-33 146.7 192 44.3
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 6.0e-33 145.6 196 38.8
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 1.0e-32 144.8 282 33.0
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 1.3e-32 144.4 254 35.0
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 1.7e-32 144.1 248 35.9
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 1.7e-32 144.1 214 36.0
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 2.3e-32 143.7 272 36.0
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 3.9e-32 142.9 246 37.8
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 3.9e-32 142.9 246 37.8
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 5.1e-32 142.5 246 33.3
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 6.6e-32 142.1 278 33.1
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 1.9e-31 140.6 249 35.3
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 7.3e-31 138.7 201 38.3
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 4.7e-30 136.0 253 35.6
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 3.4e-28 129.8 190 40.0
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.3e-27 127.9 190 40.0
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 3.8e-27 126.3 168 42.3
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 1.1e-26 124.8 225 34.7
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 1.9e-26 124.0 182 41.2
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.2e-25 121.3 287 28.9
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 1.6e-25 120.9 241 33.2
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 2.1e-25 120.6 335 32.2
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 1.0e-24 118.2 239 32.2
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 1.7e-24 117.5 256 32.0
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 3.0e-24 116.7 273 30.4
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 5.1e-24 115.9 214 36.4
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 5.6e-23 112.5 172 37.2
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 1.4e-21 107.8 164 42.7
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 1.4e-21 107.8 182 34.6
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 8.4e-19 98.6 133 42.1
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 3.0e-16 90.1 127 40.9
Thhalv10022957m.g Eutrema salsugineum HOM05D001524 ORTHO05D001392 8.4e-11 72.0 210 29.5
Zm00001eb221040 Zea mays HOM05D001524 ORTHO05D001392 1.1e-10 71.6 234 30.8
Thhalv10022994m.g Eutrema salsugineum HOM05D001524 ORTHO05D001392 1.4e-10 71.2 210 29.0
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 2.4e-10 70.5 114 36.8
Actinidia17487 Actinidia chinensis HOM05D001524 ORTHO05D001392 2.1e-09 67.4 250 28.8
A03p45390 Brassica napus HOM05D001524 ORTHO05D001392 4.6e-09 66.2 211 27.5
BraA03t13671Z Brassica rapa HOM05D001524 ORTHO05D001392 4.6e-09 66.2 211 27.5
Lj1g0018373 Lotus japonicus HOM05D001524 ORTHO05D001392 7.9e-09 65.5 214 26.6
BcaB08g34583 Brassica carinata HOM05D001524 ORTHO05D001392 1.0e-08 65.1 217 26.3
BcaC01g03070 Brassica carinata HOM05D001524 ORTHO05D001392 1.0e-08 65.1 217 27.2
BolC3t17923H Brassica oleracea HOM05D001524 ORTHO05D001392 1.0e-08 65.1 217 27.2
Solyc01g080790.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 1.3e-08 64.7 241 27.4
C03p56330 Brassica napus HOM05D001524 ORTHO05D001392 1.8e-08 64.3 217 27.2
AUR62010322 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.8e-08 64.3 214 28.0
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 1.8e-08 64.3 241 27.4
Sp3g28460 Schrenkiella parvula HOM05D001524 ORTHO05D001392 2.3e-08 63.9 214 28.0
ClCG02G006460 Citrullus lanatus HOM05D001524 ORTHO05D001392 3.0e-08 63.5 216 29.6
Nn3g18310 Nelumbo nucifera HOM05D001524 ORTHO05D001392 3.9e-08 63.2 238 24.8
AUR62039065 Chenopodium quinoa HOM05D001524 ORTHO05D001392 5.1e-08 62.8 242 25.6
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 6.7e-08 62.4 235 27.2
Aa31LG8G13040 Aethionema arabicum HOM05D001524 ORTHO05D001392 8.7e-08 62.0 212 26.9
AT2G15220 Arabidopsis thaliana HOM05D001524 ORTHO05D001392 8.7e-08 62.0 214 28.5
Sed0022824 Sechium edule HOM05D001524 ORTHO05D001392 8.7e-08 62.0 243 28.0
AUR62039066 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.1e-07 61.6 214 27.6
Sp3g28450 Schrenkiella parvula HOM05D001524 ORTHO05D001392 1.5e-07 61.2 219 30.6
HanXRQChr10g0295791 Helianthus annuus HOM05D001524 ORTHO05D001392 1.9e-07 60.8 190 27.9
CARHR105570 Cardamine hirsuta HOM05D001524 ORTHO05D001392 2.5e-07 60.5 116 35.3
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 2.5e-07 60.5 238 26.1
PGSC0003DMG400006276 Solanum tuberosum HOM05D001524 ORTHO05D001392 2.5e-07 60.5 241 26.6
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 3.3e-07 60.1 63 44.4
THA.LOC104819552 Tarenaya hassleriana HOM05D001524 ORTHO05D001392 3.3e-07 60.1 215 26.0
Zm00001eb044960 Zea mays HOM05D001524 ORTHO05D001392 3.3e-07 60.1 240 27.9
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 7.4e-07 58.9 235 28.1
CsaV3_7G008240 Cucumis sativus L. HOM05D001524 ORTHO05D001392 9.6e-07 58.5 211 26.5
SalBow6G1183 Salvia bowleyana HOM05D001524 ORTHO05D001392 9.6e-07 58.5 209 24.4
VMungo0720G2083 Vigna mungo HOM05D001524 ORTHO05D001392 9.6e-07 58.5 215 28.4
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 1.3e-06 58.2 230 26.5
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 1.3e-06 58.2 236 28.0
Eucgr.G01335 Eucalyptus grandis HOM05D001524 ORTHO05D001392 1.3e-06 58.2 235 26.8
Lsat_1_v5_gn_9_112160 Lactuca sativa HOM05D001524 ORTHO05D001392 1.3e-06 58.2 235 28.1
Migut.B00394 Erythranthe guttata HOM05D001524 ORTHO05D001392 1.6e-06 57.8 98 33.7
PSO675G6294 Papaver somniferum HOM05D001524 ORTHO05D001392 1.6e-06 57.8 130 30.8
AL3G46920 Arabidopsis lyrata HOM05D001524 ORTHO05D001392 2.8e-06 57.0 219 27.4
CSS0038199 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 2.8e-06 57.0 196 29.1
Glyma.20G130000 Glycine max HOM05D001524 ORTHO05D001392 2.8e-06 57.0 235 28.1
Carub.0003s2905 Capsella rubella HOM05D001524 ORTHO05D001392 3.7e-06 56.6 123 33.3
CARHR105610 Cardamine hirsuta HOM05D001524 ORTHO05D001392 3.7e-06 56.6 120 35.0
MELO3C018483.2 Cucumis melo HOM05D001524 ORTHO05D001392 3.7e-06 56.6 211 28.0
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 3.7e-06 56.6 235 28.1
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 3.7e-06 56.6 235 25.5
QL11p033161 Quercus lobata HOM05D001524 ORTHO05D001392 3.7e-06 56.6 216 25.9
CAN.G606.6 Capsicum annuum HOM05D001524 ORTHO05D001392 4.8e-06 56.2 241 24.9
HanXRQChr03g0070441 Helianthus annuus HOM05D001524 ORTHO05D001392 4.8e-06 56.2 233 24.9
Atru.chr3.2817 Acer truncatum HOM05D001524 ORTHO05D001392 6.2e-06 55.8 169 27.2
Atru.chr5.2483 Acer truncatum HOM05D001524 ORTHO05D001392 6.2e-06 55.8 104 34.6
Eucgr.G01332 Eucalyptus grandis HOM05D001524 ORTHO05D001392 6.2e-06 55.8 106 34.0
SEGI_18619 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 6.2e-06 55.8 104 32.7
Atru.chr3.2819 Acer truncatum HOM05D001524 ORTHO05D001392 8.1e-06 55.5 164 28.0
EL10Ac9g22263 Beta vulgaris HOM05D001524 ORTHO05D001392 8.1e-06 55.5 108 34.3
Psat6g223280 Pisum sativum HOM05D001524 ORTHO05D001392 8.1e-06 55.5 213 25.8


User provided reference genes

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