Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23621 Striga asiatica HOM05D007704 ORTHO05D009758 5.7e-156 554.3 299 100.0
MSTRG.15037 Avicennia marina HOM05D007704 ORTHO05D009758 2.9e-75 286.2 310 57.4
Migut.M00569 Erythranthe guttata HOM05D007704 ORTHO05D009758 3.5e-68 262.7 306 54.6
Cc05_g09660 Coffea canephora HOM05D007704 ORTHO05D009758 7.5e-47 191.8 284 44.7
Ciclev10032332m.g Citrus clementina HOM05D007704 ORTHO05D009758 9.8e-47 191.4 265 43.8
unitig_85.g27396 Utricularia gibba HOM05D007704 ORTHO05D009758 1.8e-45 187.2 295 45.4
PGSC0003DMG400007847 Solanum tuberosum HOM05D007704 ORTHO05D009758 2.3e-43 180.3 263 44.9
Peaxi162Scf00789g00013 Petunia axillaris HOM05D007704 ORTHO05D009758 2.9e-43 179.9 251 44.2
Solyc12g011190.2 Solanum lycopersicum HOM05D007704 ORTHO05D009758 2.5e-42 176.8 253 46.6
TAR626G0172 Trochodendron aralioides HOM05D007704 ORTHO05D009758 2.5e-42 176.8 273 40.7
Sopen12g006550 Solanum pennellii HOM05D007704 ORTHO05D009758 5.6e-42 175.6 290 44.5
Nitab4.5_0001232g0110 Nicotiana tabacum HOM05D007704 ORTHO05D009758 2.1e-41 173.7 254 44.1
COL.COLO4_08458 Corchorus olitorius HOM05D007704 ORTHO05D009758 2.8e-41 173.3 260 41.9
Nn3g20648 Nelumbo nucifera HOM05D007704 ORTHO05D009758 8.0e-41 171.8 266 40.6
Gorai.012G040100 Gossypium raimondii HOM05D007704 ORTHO05D009758 1.4e-40 171.0 261 41.0
Thecc.01G163800 Theobroma cacao HOM05D007704 ORTHO05D009758 2.3e-40 170.2 261 41.4
TWI59G0036 Tripterygium wilfordii HOM05D007704 ORTHO05D009758 2.3e-40 170.2 268 41.4
Gohir.A05G379900 Gossypium hirsutum HOM05D007704 ORTHO05D009758 3.1e-40 169.9 261 41.4
Gohir.D04G035566 Gossypium hirsutum HOM05D007704 ORTHO05D009758 1.2e-39 167.9 261 40.6
Potri.002G058800 Populus trichocarpa HOM05D007704 ORTHO05D009758 7.5e-39 165.2 268 41.0
GSVIVG01020855001 Vitis vinifera HOM05D007704 ORTHO05D009758 9.8e-39 164.9 276 40.9
Atru.chr6.2068_Atru.chr6.2069 Acer truncatum HOM05D007704 ORTHO05D009758 2.2e-38 163.7 268 41.0
Sabra02G0047700 Salix brachista HOM05D007704 ORTHO05D009758 1.0e-35 154.8 295 38.6
Aqoxy4G00112 Aquilegia oxysepala HOM05D007704 ORTHO05D009758 3.9e-35 152.9 271 38.4
QL08p044652 Quercus lobata HOM05D007704 ORTHO05D009758 3.3e-34 149.8 297 34.3
ATR0757G094 Amborella trichopoda HOM05D007704 ORTHO05D009758 1.4e-32 144.4 286 36.0
Sc16g0011630 Simmondsia chinensis HOM05D007704 ORTHO05D009758 5.2e-32 142.5 260 39.6
EL10Ac4g10303 Beta vulgaris HOM05D007704 ORTHO05D009758 6.4e-30 135.6 264 37.9
Hund07540 Selenicereus undatus HOM05D008449 ORTHO05D010615 1.1e-29 134.8 265 38.9
Os01g0246500 Oryza sativa ssp. japonica HOM05D007704 ORTHO05D009758 2.4e-29 133.7 264 36.0
AUR62000092 Chenopodium quinoa HOM05D007704 ORTHO05D009758 1.2e-28 131.3 270 37.0
MBI07_g07812_MAGBIO Magnolia biondii HOM05D007704 ORTHO05D009758 4.6e-28 129.4 273 35.2
HPP92_003909 Vanilla planifolia HOM05D007704 ORTHO05D009758 5.1e-27 125.9 252 33.7
Ah.06g193590 Amaranthus hybridus HOM05D003002 ORTHO05D003583 1.1e-26 124.8 254 36.2
AUR62019264 Chenopodium quinoa HOM05D007704 ORTHO05D009758 5.6e-26 122.5 201 43.3
CDE09G0200 Ceratophyllum demersum HOM05D007704 ORTHO05D009758 2.1e-25 120.6 247 35.2
Zm00001eb118790 Zea mays HOM05D007704 ORTHO05D009758 1.1e-24 118.2 267 35.6
CAN.G164.19 Capsicum annuum HOM05D007704 ORTHO05D009758 9.9e-23 111.7 122 58.2
Aqoxy4G03087 Aquilegia oxysepala HOM05D007704 ORTHO05D009758 1.0e-19 101.7 84 56.0
Cpa.g.sc50.98 Carica papaya HOM05D007704 ORTHO05D009758 3.6e-17 93.2 145 40.7
Gohir.D03G060100 Gossypium hirsutum HOM05D007704 ORTHO05D009758 8.1e-17 92.0 72 56.9
Gorai.003G063900 Gossypium raimondii HOM05D007704 ORTHO05D009758 6.8e-16 89.0 67 59.7
FAN09G1582 Fragaria x ananassa HOM05D007704 ORTHO05D009758 4.4e-15 86.3 134 41.8
MD17G1137700 Malus domestica HOM05D007704 ORTHO05D009758 4.4e-15 86.3 167 36.5
Prupe.3G174900 Prunus persica HOM05D007704 ORTHO05D009758 4.4e-15 86.3 128 42.2
BcaC07g42062 Brassica carinata HOM05D007704 ORTHO05D009758 2.2e-14 84.0 147 38.1
CAN.G164.20 Capsicum annuum HOM05D007704 ORTHO05D009758 2.2e-14 84.0 122 42.6
FvH4_6g38482 Fragaria vesca HOM05D007704 ORTHO05D009758 2.2e-14 84.0 170 35.9
FAN14G3331 Fragaria x ananassa HOM05D007704 ORTHO05D009758 2.2e-14 84.0 170 35.9
arahy.Tifrunner.gnm1.ann1.I86J5P Arachis hypogaea HOM05D007704 ORTHO05D009758 2.9e-14 83.6 125 36.8
TPR.G16762 Trifolium pratense HOM05D007704 ORTHO05D009758 2.9e-14 83.6 151 33.8
AagrBONN_evm.TU.Sc2ySwM_344.3472 Anthoceros agrestis HOM05D007704 ORTHO05D009758 3.8e-14 83.2 225 33.8
VMungo0540G0710 Vigna mungo HOM05D007704 ORTHO05D009758 3.8e-14 83.2 173 34.7
FvH4_6g38470 Fragaria vesca HOM05D007704 ORTHO05D009758 4.9e-14 82.8 168 35.7
FAN02G0747 Fragaria x ananassa HOM05D007704 ORTHO05D009758 4.9e-14 82.8 166 36.1
HPP92_003904 Vanilla planifolia HOM05D007704 ORTHO05D009758 4.9e-14 82.8 68 51.5
PGR042G3448 Punica granatum HOM05D007704 ORTHO05D009758 6.4e-14 82.4 120 41.7
THA.LOC104800828 Tarenaya hassleriana HOM05D007704 ORTHO05D009758 6.4e-14 82.4 125 39.2
C08p51180 Brassica napus HOM05D007704 ORTHO05D009758 1.1e-13 81.6 142 39.4
BolC8t52645H Brassica oleracea HOM05D000230 ORTHO05D000176 1.1e-13 81.6 142 39.4
Glyma.08G308800 Glycine max HOM05D007704 ORTHO05D009758 1.9e-13 80.9 148 37.8
RcHm_v2.0_Chr2g0151721 Rosa chinensis HOM05D007704 ORTHO05D009758 2.4e-13 80.5 155 36.1
A09p66950 Brassica napus HOM05D000230 ORTHO05D000176 3.2e-13 80.1 143 40.6
BraA09t42030Z Brassica rapa HOM05D000230 ORTHO05D000176 3.2e-13 80.1 143 40.6
DCAR_013319 Daucus carota HOM05D007704 ORTHO05D009758 7.1e-13 79.0 222 30.6
Sp1g05260 Schrenkiella parvula HOM05D007704 ORTHO05D009758 7.1e-13 79.0 143 36.4
Carub.0001s0586 Capsella rubella HOM05D007704 ORTHO05D009758 9.2e-13 78.6 139 34.5
Medtr3g047590 Medicago truncatula HOM05D007704 ORTHO05D009758 1.2e-12 78.2 119 36.1
Thhalv10009066m.g Eutrema salsugineum HOM05D007704 ORTHO05D009758 1.6e-12 77.8 143 36.4
CARHR006110 Cardamine hirsuta HOM05D007704 ORTHO05D009758 2.7e-12 77.0 120 35.0
Haze_13518 Corylus avellana HOM05D007704 ORTHO05D009758 2.7e-12 77.0 133 37.6
Phvul.006G032200 Phaseolus vulgaris HOM05D007704 ORTHO05D009758 2.7e-12 77.0 150 36.7
Ca_14608_v3 Cicer arietinum L. HOM05D007704 ORTHO05D009758 3.5e-12 76.6 121 40.5
AL1G16520 Arabidopsis lyrata HOM05D007704 ORTHO05D009758 4.6e-12 76.3 139 32.4
Psat0s3897g0040 Pisum sativum HOM05D007704 ORTHO05D009758 4.6e-12 76.3 147 34.0
AT1G06500 Arabidopsis thaliana HOM05D007704 ORTHO05D009758 7.8e-12 75.5 139 33.1
arahy.Tifrunner.gnm1.ann1.Q0GQHR Arachis hypogaea HOM05D007704 ORTHO05D009758 1.3e-11 74.7 125 34.4
Eucgr.A01992 Eucalyptus grandis HOM05D007704 ORTHO05D009758 3.0e-11 73.6 167 33.5
Glyma.18G107800 Glycine max HOM05D007704 ORTHO05D009758 3.9e-11 73.2 156 35.9
THA.LOC104827393 Tarenaya hassleriana HOM05D007704 ORTHO05D009758 6.6e-11 72.4 119 38.7
Sed0015338 Sechium edule HOM05D007704 ORTHO05D009758 1.1e-10 71.6 121 38.8
Zm00001eb231720 Zea mays HOM05D000455 ORTHO05D000434 2.8e-09 67.0 61 45.9
Lj6g0009873 Lotus japonicus HOM05D007704 ORTHO05D009758 8.1e-09 65.5 167 29.9
Eucgr.A02009 Eucalyptus grandis HOM05D007704 ORTHO05D009758 4.0e-08 63.2 142 33.8
Mapoly0023s0099 Marchantia polymorpha HOM05D007704 ORTHO05D009758 4.0e-08 63.2 128 35.9
Eucgr.A01996 Eucalyptus grandis HOM05D007704 ORTHO05D009758 5.3e-08 62.8 113 38.1
Duzib014G0001 Durio zibethinus HOM05D007704 ORTHO05D009758 6.9e-08 62.4 72 45.8
FAN05G1345 Fragaria x ananassa HOM05D007704 ORTHO05D009758 2.0e-07 60.8 139 32.4
Os02g0136000 Oryza sativa ssp. japonica HOM05D000455 ORTHO05D000434 2.0e-07 60.8 59 44.1
CDE02G3352 Ceratophyllum demersum HOM05D000427 ORTHO05D000386 2.6e-07 60.5 99 36.4
THA.LOC104803900 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 7.6e-07 58.9 46 52.2
SalBow2G0367 Salvia bowleyana HOM05D000455 ORTHO05D000434 9.9e-07 58.5 46 47.8
GSVIVG01019600001 Vitis vinifera HOM05D000455 ORTHO05D000434 9.9e-07 58.5 191 26.2
CDE03G0045 Ceratophyllum demersum HOM05D000455 ORTHO05D000434 1.3e-06 58.2 46 52.2
Medtr1g100970 Medicago truncatula HOM05D000455 ORTHO05D000434 1.3e-06 58.2 107 31.8
Aa31LG1G7580 Aethionema arabicum HOM05D007704 ORTHO05D009758 1.7e-06 57.8 136 33.1
CDE05G1912 Ceratophyllum demersum HOM05D004557 ORTHO05D005258 1.7e-06 57.8 64 43.8
BolC8t49656H Brassica oleracea HOM05D000455 ORTHO05D000434 2.2e-06 57.4 113 31.9
Lj5g0025579 Lotus japonicus HOM05D000455 ORTHO05D000434 2.2e-06 57.4 109 31.2
Actinidia18002 Actinidia chinensis HOM05D000455 ORTHO05D000434 2.9e-06 57.0 76 36.8
C08p20270 Brassica napus HOM05D000455 ORTHO05D000434 2.9e-06 57.0 113 31.9
Cc09_g10750 Coffea canephora HOM05D000455 ORTHO05D000434 2.9e-06 57.0 58 41.4
Nn1g00300 Nelumbo nucifera HOM05D000455 ORTHO05D000434 2.9e-06 57.0 145 32.4
PRCOL_00007102 Prasinoderma coloniale HOM05D007704 ORTHO05D009758 2.9e-06 57.0 47 46.8
Sed0008415 Sechium edule HOM05D000455 ORTHO05D000434 2.9e-06 57.0 59 42.4
Atru.chr9.1944 Acer truncatum HOM05D000455 ORTHO05D000434 3.8e-06 56.6 59 42.4
CiPaw.11G116600 Carya illinoinensis HOM05D000455 ORTHO05D000434 3.8e-06 56.6 109 30.3
CBR_g4496 Chara braunii HOM05D004557 ORTHO05D005258 3.8e-06 56.6 90 32.2
Lj2g0024646 Lotus japonicus HOM05D000455 ORTHO05D000434 3.8e-06 56.6 46 52.2
arahy.Tifrunner.gnm1.ann1.0FWB0U Arachis hypogaea HOM05D000455 ORTHO05D000434 4.9e-06 56.2 105 33.3
arahy.Tifrunner.gnm1.ann1.LH2L98 Arachis hypogaea HOM05D000455 ORTHO05D000434 4.9e-06 56.2 105 33.3
SalBow3G2285 Salvia bowleyana HOM05D000455 ORTHO05D000434 4.9e-06 56.2 46 50.0
HPP92_024142 Vanilla planifolia HOM05D000455 ORTHO05D000434 4.9e-06 56.2 56 42.9
CDE06G0034 Ceratophyllum demersum HOM05D000455 ORTHO05D000434 6.4e-06 55.8 46 47.8
Ca_10746_v3 Cicer arietinum L. HOM05D000455 ORTHO05D000434 6.4e-06 55.8 111 30.6
Gohir.D02G011100 Gossypium hirsutum HOM05D000455 ORTHO05D000434 6.4e-06 55.8 58 41.4
Gorai.005G013500 Gossypium raimondii HOM05D000455 ORTHO05D000434 6.4e-06 55.8 58 41.4
Hma1.2p1_0324F.1_g125710 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 6.4e-06 55.8 46 47.8
Lalb_Chr24g0396651 Lupinus albus HOM05D000455 ORTHO05D000434 6.4e-06 55.8 58 41.4
Manes.01G053000 Manihot esculenta HOM05D000455 ORTHO05D000434 6.4e-06 55.8 59 40.7
Manes.02G006700 Manihot esculenta HOM05D000455 ORTHO05D000434 6.4e-06 55.8 59 40.7
Medtr0022s0430 Medicago truncatula HOM05D000455 ORTHO05D000434 6.4e-06 55.8 58 43.1
PSO063G2561 Papaver somniferum HOM05D000455 ORTHO05D000434 6.4e-06 55.8 59 40.7
PSO170G2314 Papaver somniferum HOM05D000455 ORTHO05D000434 6.4e-06 55.8 59 40.7
Sabra01G0064300 Salix brachista HOM05D000455 ORTHO05D000434 6.4e-06 55.8 52 44.2
TAR629G0003 Trochodendron aralioides HOM05D000455 ORTHO05D000434 6.4e-06 55.8 59 40.7
HPP92_004519 Vanilla planifolia HOM05D000455 ORTHO05D000434 6.4e-06 55.8 46 47.8
HPP92_004528 Vanilla planifolia HOM05D000455 ORTHO05D000434 6.4e-06 55.8 46 47.8
Zm00001eb078590 Zea mays HOM05D000455 ORTHO05D000434 6.4e-06 55.8 59 44.1
Zm00001eb425660 Zea mays HOM05D000455 ORTHO05D000434 6.4e-06 55.8 59 44.1
Aa31LG6G7230 Aethionema arabicum HOM05D000455 ORTHO05D000434 8.4e-06 55.5 135 30.4
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 8.4e-06 55.5 50 50.0
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 8.4e-06 55.5 58 41.4
C07p61060 Brassica napus HOM05D000455 ORTHO05D000434 8.4e-06 55.5 145 28.3
BolC7t46531H Brassica oleracea HOM05D000455 ORTHO05D000434 8.4e-06 55.5 145 28.3
CAN.G792.32 Capsicum annuum HOM05D000455 ORTHO05D000434 8.4e-06 55.5 58 41.4
CiPaw.12G080700 Carya illinoinensis HOM05D000455 ORTHO05D000434 8.4e-06 55.5 59 40.7
Dinv37495 Davidia involucrata HOM05D002718 ORTHO05D003269 8.4e-06 55.5 59 40.7
Duzib205G1505 Durio zibethinus HOM05D000455 ORTHO05D000434 8.4e-06 55.5 59 40.7
FvH4_5g11570 Fragaria vesca HOM05D000455 ORTHO05D000434 8.4e-06 55.5 58 41.4
FAN13G2452 Fragaria x ananassa HOM05D000455 ORTHO05D000434 8.4e-06 55.5 58 41.4
FAN18G2525 Fragaria x ananassa HOM05D000455 ORTHO05D000434 8.4e-06 55.5 58 41.4
FAN18G2932 Fragaria x ananassa HOM05D000455 ORTHO05D000434 8.4e-06 55.5 58 41.4
Hma1.2p1_0271F.1_g108890 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 8.4e-06 55.5 151 31.1
Mapoly0049s0118 Marchantia polymorpha HOM05D004557 ORTHO05D005258 8.4e-06 55.5 50 50.0
Os04g0495800 Oryza sativa ssp. japonica HOM05D000455 ORTHO05D000434 8.4e-06 55.5 58 43.1
Pp3c20_5720 Physcomitrium patens HOM05D032039 ORTHO05D005258 8.4e-06 55.5 50 50.0
Pp3c24_6460 Physcomitrium patens HOM05D004557 ORTHO05D005258 8.4e-06 55.5 50 50.0
THA.LOC104809819 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 8.4e-06 55.5 59 39.0
TAR375G0327 Trochodendron aralioides HOM05D000455 ORTHO05D000434 8.4e-06 55.5 59 40.7


User provided reference genes

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