Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 4.3e-156 554.7 293 100.0
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.7e-56 223.8 306 44.8
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.9e-47 193.7 326 41.7
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 6.2e-46 188.7 326 39.9
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 9.9e-44 181.4 304 43.4
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 8.4e-43 178.3 348 36.5
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 8.4e-43 178.3 312 38.8
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 1.8e-40 170.6 332 38.3
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 9.6e-39 164.9 316 35.8
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 9.6e-39 164.9 319 39.5
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 2.0e-36 157.1 330 38.5
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 5.8e-36 155.6 325 35.7
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 1.7e-35 154.1 306 37.3
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 2.2e-35 153.7 321 36.1
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 4.9e-35 152.5 284 40.1
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 1.4e-34 151.0 324 38.3
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 1.4e-34 151.0 331 36.9
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.9e-34 150.6 328 34.8
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.5e-34 150.2 308 37.3
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 4.6e-33 146.0 322 37.0
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.0e-32 143.3 340 35.6
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 3.9e-32 142.9 321 35.8
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 1.5e-31 141.0 321 36.8
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.9e-31 140.6 326 33.7
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 1.9e-31 140.6 329 34.0
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 1.9e-31 140.6 316 36.4
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.9e-31 140.6 325 36.0
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 2.5e-31 140.2 318 36.5
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 7.4e-31 138.7 343 33.8
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.6e-30 137.5 313 35.8
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 2.8e-30 136.7 324 34.3
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.8e-30 136.7 313 35.8
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.7e-30 136.3 340 33.8
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 1.1e-29 134.8 315 35.6
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.4e-29 134.4 346 32.4
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.8e-29 134.0 331 30.5
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 3.1e-29 133.3 320 37.2
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 4.0e-29 132.9 316 34.5
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 5.3e-29 132.5 326 34.4
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 6.9e-29 132.1 341 33.7
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.5e-28 131.0 327 34.9
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 1.5e-28 131.0 316 36.4
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.0e-28 130.6 325 33.5
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.6e-28 130.2 347 32.9
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 3.4e-28 129.8 330 33.9
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 4.5e-28 129.4 331 34.4
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 4.5e-28 129.4 322 33.9
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.7e-27 127.5 314 33.8
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.7e-27 127.5 314 33.8
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 1.7e-27 127.5 324 31.5
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 2.2e-27 127.1 322 33.9
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 2.2e-27 127.1 323 33.7
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 2.2e-27 127.1 319 33.2
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 2.9e-27 126.7 331 34.1
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 2.9e-27 126.7 306 34.3
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 2.9e-27 126.7 341 32.3
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 2.9e-27 126.7 324 35.8
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 3.8e-27 126.3 331 33.8
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 3.8e-27 126.3 338 32.5
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 6.5e-27 125.6 312 35.6
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 8.4e-27 125.2 301 33.9
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 2.5e-26 123.6 335 32.2
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 4.2e-26 122.9 332 29.5
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 5.5e-26 122.5 305 34.8
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 5.5e-26 122.5 325 34.2
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 7.1e-26 122.1 321 32.1
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 9.3e-26 121.7 320 33.4
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 9.3e-26 121.7 315 33.7
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 1.2e-25 121.3 303 33.7
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 1.2e-25 121.3 313 32.3
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 1.6e-25 120.9 335 33.1
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 3.5e-25 119.8 322 35.7
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 6.1e-25 119.0 306 30.4
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 7.9e-25 118.6 329 33.7
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 1.3e-24 117.9 322 32.3
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 1.8e-24 117.5 268 35.1
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.3e-24 117.1 304 33.9
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 3.0e-24 116.7 305 31.8
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 3.0e-24 116.7 306 34.3
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 3.0e-24 116.7 210 37.6
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 5.1e-24 115.9 307 33.2
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 5.1e-24 115.9 310 31.6
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.7e-24 115.5 321 32.1
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.7e-24 115.2 322 32.3
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 8.7e-24 115.2 321 32.1
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 8.7e-24 115.2 317 32.5
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.1e-23 114.8 321 34.0
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 1.9e-23 114.0 300 33.7
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.5e-23 113.6 320 34.1
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 4.3e-23 112.8 296 32.4
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.7e-23 112.5 321 34.0
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 7.4e-23 112.1 320 33.4
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 1.6e-22 110.9 308 31.5
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 1.6e-22 110.9 319 32.3
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 4.8e-22 109.4 321 32.7
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 4.8e-22 109.4 300 33.7
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 4.8e-22 109.4 309 30.4
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 1.1e-21 108.2 318 32.4
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 1.1e-21 108.2 299 30.8
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 1.4e-21 107.8 306 31.7
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 1.8e-21 107.5 318 33.0
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 1.8e-21 107.5 327 31.2
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.8e-21 107.5 173 42.2
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 6.9e-21 105.5 304 32.6
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 9.0e-21 105.1 318 30.2
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.2e-20 104.8 303 32.7
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 1.2e-20 104.8 305 30.5
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 1.2e-20 104.8 314 32.2
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.5e-20 104.4 315 31.4
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 2.6e-20 103.6 300 32.7
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 2.6e-20 103.6 316 30.1
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 4.5e-20 102.8 322 29.8
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 4.5e-20 102.8 222 34.2
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.2e-19 100.5 350 33.4
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 3.8e-19 99.8 191 38.7
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 5.0e-19 99.4 237 35.0
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 6.5e-19 99.0 314 30.9
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 8.5e-19 98.6 303 32.7
SGA_v2.0_scaffold70G23571 Striga asiatica HOM05D003841 ORTHO05D004602 8.5e-19 98.6 95 65.3
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 9.4e-18 95.1 315 30.5
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 1.2e-17 94.7 316 28.8
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 2.1e-17 94.0 304 30.3
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 2.7e-17 93.6 303 32.3
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 3.6e-17 93.2 313 29.1
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.1e-17 92.4 263 31.9
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 7.9e-17 92.0 271 27.7
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 1.0e-16 91.7 308 29.2
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.0e-16 91.7 263 31.6
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.9e-16 89.7 333 30.6
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 5.1e-16 89.4 224 32.1
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 8.8e-16 88.6 306 30.1
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 2.0e-15 87.4 316 30.7
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 2.0e-15 87.4 307 29.6
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 2.0e-15 87.4 336 29.5
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 4.3e-15 86.3 324 28.4
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 4.3e-15 86.3 259 31.3
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 1.1e-13 81.6 324 28.7
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.4e-13 81.3 333 26.1
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.8e-13 80.9 298 28.9
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 4.1e-13 79.7 148 39.9
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 6.9e-13 79.0 260 28.1
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 9.1e-13 78.6 189 36.5
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 1.2e-12 78.2 287 27.9
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 1.5e-12 77.8 312 26.9
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.7e-11 74.3 295 29.8
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 2.9e-11 73.6 282 28.4
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 1.9e-10 70.9 206 29.6
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 5.5e-10 69.3 328 25.6
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 2.1e-09 67.4 299 27.4
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 3.6e-09 66.6 206 28.2
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 4.7e-09 66.2 354 27.7
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 7.9e-09 65.5 129 36.4
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 7.9e-09 65.5 314 26.4
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 8.8e-08 62.0 209 29.2
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 1.1e-07 61.6 207 29.0
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.5e-07 61.2 115 40.0
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 7.4e-07 58.9 223 29.1
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.3e-06 58.2 302 25.2
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 2.8e-06 57.0 120 40.8
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 3.7e-06 56.6 166 29.5
MBI04_g09526_MAGBIO Magnolia biondii HOM05D002766 ORTHO05D002809 4.8e-06 56.2 324 27.2


User provided reference genes

Program Settings