Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23481 Striga asiatica HOM05D007205 ORTHO05D009175 1.2e-152 543.1 279 100.0
SGA_v2.0_scaffold10G05347 Striga asiatica HOM05D007205 ORTHO05D009175 5.5e-60 235.3 176 72.2
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 3.9e-29 132.9 133 50.4
SalBow2G2732 Salvia bowleyana HOM05D007205 ORTHO05D009175 2.0e-25 120.6 259 34.0
Nn5g28818 Nelumbo nucifera HOM05D007205 ORTHO05D009175 7.5e-25 118.6 175 38.9
Thecc.02G165600 Theobroma cacao HOM05D007205 ORTHO05D009175 1.7e-24 117.5 175 42.3
Sopen07g026550 Solanum pennellii HOM05D007205 ORTHO05D009175 2.2e-24 117.1 184 35.9
Potri.013G152200 Populus trichocarpa HOM05D007205 ORTHO05D009175 6.4e-24 115.5 177 40.1
Solyc07g053000.1 Solanum lycopersicum HOM05D007205 ORTHO05D009175 6.4e-24 115.5 184 35.9
Duzib132G1034 Durio zibethinus HOM05D007205 ORTHO05D009175 8.3e-24 115.2 179 40.2
TAR626G1876 Trochodendron aralioides HOM05D007205 ORTHO05D009175 1.9e-23 114.0 169 42.6
Gohir.D02G185500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 5.4e-23 112.5 177 39.5
Gorai.005G208100 Gossypium raimondii HOM05D007205 ORTHO05D009175 5.4e-23 112.5 177 39.5
PGSC0003DMG400040434 Solanum tuberosum HOM05D007205 ORTHO05D009175 5.4e-23 112.5 184 33.7
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 9.2e-23 111.7 178 38.8
Gohir.A03G162500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 1.6e-22 110.9 278 34.2
Sabra13G0122300 Salix brachista HOM05D007205 ORTHO05D009175 6.0e-22 109.0 200 36.0
SGA_v2.0_scaffold21G09432 Striga asiatica HOM05D049040 ORTHO05D009175 2.3e-21 107.1 67 80.6
Nitab4.5_0001134g0050 Nicotiana tabacum HOM05D007205 ORTHO05D009175 3.0e-21 106.7 186 37.6
Oeu040642.1 Olea europaea HOM05D007205 ORTHO05D009175 3.9e-21 106.3 190 36.3
Ciclev10018085m.g Citrus clementina HOM05D007205 ORTHO05D009175 5.0e-21 105.9 175 39.4
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 6.6e-21 105.5 176 34.7
Peaxi162Scf00007g00153 Petunia axillaris HOM05D007205 ORTHO05D009175 6.6e-21 105.5 167 34.7
Manes.12G078600 Manihot esculenta HOM05D007205 ORTHO05D009175 8.6e-21 105.1 176 38.1
COL.COLO4_13041 Corchorus olitorius HOM05D007205 ORTHO05D009175 1.9e-20 104.0 181 35.9
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 2.5e-20 103.6 225 32.9
CAN.G86.36 Capsicum annuum HOM05D007205 ORTHO05D009175 4.3e-20 102.8 224 30.4
MD09G1127600 Malus domestica HOM05D007205 ORTHO05D009175 2.1e-19 100.5 168 39.3
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 2.1e-19 100.5 175 37.7
Ca_01558_v3 Cicer arietinum L. HOM05D007205 ORTHO05D009175 4.7e-19 99.4 248 32.3
Cfa014480 Carpinus fangiana HOM05D007205 ORTHO05D009175 8.1e-19 98.6 182 37.4
Prupe.3G223600 Prunus persica HOM05D007205 ORTHO05D009175 8.1e-19 98.6 169 38.5
Atru.chr6.3107 Acer truncatum HOM05D007205 ORTHO05D009175 1.8e-18 97.4 176 37.5
Haze_12995 Corylus avellana HOM05D007205 ORTHO05D009175 3.1e-18 96.7 182 35.2
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 4.0e-18 96.3 250 33.2
unitig_0.g450 Utricularia gibba HOM05D007205 ORTHO05D009175 4.4e-17 92.8 177 33.9
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 9.9e-17 91.7 164 34.8
RcHm_v2.0_Chr6g0278031 Rosa chinensis HOM05D007205 ORTHO05D009175 3.7e-16 89.7 188 37.2
arahy.Tifrunner.gnm1.ann1.WFU09D Arachis hypogaea HOM05D007205 ORTHO05D009175 6.4e-16 89.0 184 32.1
CANSAT64G0219 Cannabis sativa HOM05D007205 ORTHO05D009175 6.4e-16 89.0 163 36.2
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 8.3e-16 88.6 95 48.4
FvH4_6g43900 Fragaria vesca HOM05D007205 ORTHO05D009175 1.1e-15 88.2 177 35.6
FAN09G0942 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.1e-15 88.2 182 34.6
FAN14G2816 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.1e-15 88.2 177 35.6
arahy.Tifrunner.gnm1.ann1.G6KXX8 Arachis hypogaea HOM05D007205 ORTHO05D009175 3.2e-15 86.7 184 32.1
Cpa.g.sc34.48 Carica papaya HOM05D007205 ORTHO05D009175 5.4e-15 85.9 173 35.8
ClCG02G001450 Citrullus lanatus HOM05D007205 ORTHO05D009175 2.1e-14 84.0 179 32.4
MELO3C018783.2 Cucumis melo HOM05D007205 ORTHO05D009175 2.7e-14 83.6 175 33.1
PSO675G8316 Papaver somniferum HOM05D007205 ORTHO05D009175 2.7e-14 83.6 181 35.9
TPR.G18059 Trifolium pratense HOM05D007205 ORTHO05D009175 6.0e-14 82.4 178 30.3
Lj3g0018731 Lotus japonicus HOM05D007205 ORTHO05D009175 7.8e-14 82.0 255 30.2
Aqoxy2G00583 Aquilegia oxysepala HOM05D007205 ORTHO05D009175 1.7e-13 80.9 172 34.3
CsaV3_7G003940 Cucumis sativus L. HOM05D007205 ORTHO05D009175 1.7e-13 80.9 175 32.6
FAN02G3251 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.7e-13 80.9 158 40.5
Sed0009741 Sechium edule HOM05D007205 ORTHO05D009175 2.3e-13 80.5 174 31.0
Os03g0197825 Oryza sativa ssp. japonica HOM05D014843 ORTHO05D017038 3.0e-13 80.1 67 64.2
Psat5g266880 Pisum sativum HOM05D007205 ORTHO05D009175 5.1e-13 79.3 189 30.7
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 5.1e-13 79.3 175 30.3
RcHm_v2.0_Chr1g0324271 Rosa chinensis HOM05D007205 ORTHO05D009175 5.1e-13 79.3 118 42.4
Medtr2g089200 Medicago truncatula HOM05D007205 ORTHO05D009175 6.6e-13 79.0 182 29.7
RcHm_v2.0_Chr4g0411281 Rosa chinensis HOM05D007205 ORTHO05D009175 6.6e-13 79.0 118 42.4
Glyma.13G304100 Glycine max HOM05D007205 ORTHO05D009175 8.6e-13 78.6 185 30.8
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 1.5e-12 77.8 136 36.8
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 1.5e-12 77.8 258 28.3
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 9.5e-12 75.1 176 28.4
Aa31sc352G30 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.6e-11 74.3 137 37.2
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 2.1e-11 73.9 175 33.1
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 2.1e-11 73.9 177 31.6
THA.LOC104826759 Tarenaya hassleriana HOM05D007205 ORTHO05D009175 2.1e-11 73.9 178 32.6
Phvul.002G284500 Phaseolus vulgaris HOM05D007205 ORTHO05D009175 2.8e-11 73.6 179 32.4
Aa31sc947G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 3.6e-11 73.2 137 37.2
Lsat_1_v5_gn_3_42520 Lactuca sativa HOM05D007205 ORTHO05D009175 4.7e-11 72.8 182 26.9
RcHm_v2.0_Chr2g0160671 Rosa chinensis HOM05D007205 ORTHO05D009175 4.7e-11 72.8 145 35.9
Aa31sc535G20 Aethionema arabicum HOM05D007205 ORTHO05D009175 6.2e-11 72.4 137 36.5
Aa31sc352G60 Aethionema arabicum HOM05D007205 ORTHO05D009175 8.1e-11 72.0 240 29.2
PSO017G6138 Papaver somniferum HOM05D007205 ORTHO05D009175 1.4e-10 71.2 270 29.3
VMungo0251G0055 Vigna mungo HOM05D007205 ORTHO05D009175 1.4e-10 71.2 179 31.3
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 3.1e-10 70.1 242 27.7
AT5G06920 Arabidopsis thaliana HOM05D007205 ORTHO05D009175 4.0e-10 69.7 173 30.6
BcaC02g10449 Brassica carinata HOM05D007205 ORTHO05D009175 4.0e-10 69.7 250 28.8
Carub.0006s0584 Capsella rubella HOM05D007205 ORTHO05D009175 5.2e-10 69.3 161 32.3
C04p28790 Brassica napus HOM05D007205 ORTHO05D009175 6.8e-10 68.9 250 28.8
Carub.0130s0001 Capsella rubella HOM05D007205 ORTHO05D009175 6.8e-10 68.9 161 32.3
CARHR206230 Cardamine hirsuta HOM05D007205 ORTHO05D009175 6.8e-10 68.9 230 29.1
Os08g0554501 Oryza sativa ssp. japonica HOM05D014843 ORTHO05D017038 6.8e-10 68.9 67 59.7
Aa31LG5G24200 Aethionema arabicum HOM05D007205 ORTHO05D009175 3.4e-09 66.6 78 43.6
FAN05G3426 Fragaria x ananassa HOM05D007205 ORTHO05D009175 3.4e-09 66.6 146 32.9
FAN05G5134 Fragaria x ananassa HOM05D007205 ORTHO05D009175 3.4e-09 66.6 146 32.9
Os01g0572200 Oryza sativa ssp. japonica HOM05D014843 ORTHO05D017038 3.4e-09 66.6 68 58.8
SGA_v2.0_scaffold75G24874 Striga asiatica HOM05D014843 ORTHO05D017038 3.4e-09 66.6 69 58.0
Os01g0935050 Oryza sativa ssp. japonica HOM05D014843 ORTHO05D017038 5.8e-09 65.9 74 54.1
A03p67950 Brassica napus HOM05D007205 ORTHO05D009175 9.9e-09 65.1 174 29.9
BraA01t02676Z Brassica rapa HOM05D007205 ORTHO05D009175 9.9e-09 65.1 174 29.9
PGR042G1067 Punica granatum HOM05D007205 ORTHO05D009175 9.9e-09 65.1 188 27.7
HanXRQChr17g0564241 Helianthus annuus HOM05D007205 ORTHO05D009175 2.9e-08 63.5 182 28.6
BcaB01g02893 Brassica carinata HOM05D007205 ORTHO05D009175 3.8e-08 63.2 257 26.1
Sp6g35950 Schrenkiella parvula HOM05D007205 ORTHO05D009175 3.8e-08 63.2 200 30.5
BraA03t09662Z Brassica rapa HOM05D007205 ORTHO05D009175 6.4e-08 62.4 251 26.7
AL6G17070 Arabidopsis lyrata HOM05D007205 ORTHO05D009175 8.4e-08 62.0 112 36.6
Thhalv10015696m.g Eutrema salsugineum HOM05D007205 ORTHO05D009175 1.4e-07 61.2 128 35.2
Os02g0672150 Oryza sativa ssp. japonica HOM05D014843 ORTHO05D017038 1.4e-07 61.2 68 55.9
A03p03030 Brassica napus HOM05D007205 ORTHO05D009175 1.9e-07 60.8 251 25.5
HanXRQChr17g0542941 Helianthus annuus HOM05D007205 ORTHO05D009175 3.2e-07 60.1 135 26.7
Os10g0419250 Oryza sativa ssp. japonica HOM05D014843 ORTHO05D017038 1.2e-06 58.2 77 48.1
CAN.G86.39 Capsicum annuum HOM05D007205 ORTHO05D009175 2.7e-06 57.0 81 38.3
Actinidia12481 Actinidia chinensis HOM05D007205 ORTHO05D009175 4.6e-06 56.2 55 45.5
BcaB01g05708 Brassica carinata HOM05D007205 ORTHO05D009175 7.8e-06 55.5 61 47.5


User provided reference genes

Program Settings