Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 1.1e-142 510.0 265 100.0
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 3.5e-112 408.7 320 71.6
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 7.0e-105 384.4 268 75.7
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.7e-103 379.8 270 74.4
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 2.2e-103 379.4 270 74.1
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 6.5e-103 377.9 270 74.8
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.5e-102 376.7 269 74.3
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 4.2e-102 375.2 268 75.7
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 7.2e-102 374.4 270 73.0
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 7.2e-102 374.4 270 73.0
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 7.2e-102 374.4 265 74.3
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 1.6e-101 373.2 269 74.3
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.6e-101 373.2 265 73.6
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.1e-101 372.9 269 73.6
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 2.1e-101 372.9 271 74.9
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 4.7e-101 371.7 270 72.2
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 6.1e-101 371.3 270 74.4
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 6.1e-101 371.3 271 72.3
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 6.1e-101 371.3 269 73.2
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 8.0e-101 370.9 269 73.2
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.8e-100 369.8 269 73.2
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.8e-100 369.8 269 73.2
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.0e-100 368.6 269 72.5
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 4.0e-100 368.6 269 73.6
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 8.8e-100 367.5 276 71.0
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.2e-99 367.1 270 71.9
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 2.0e-99 366.3 269 72.9
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.0e-99 366.3 270 70.7
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.0e-99 366.3 270 70.7
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 3.4e-99 365.5 273 72.9
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 3.4e-99 365.5 271 72.7
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 3.4e-99 365.5 271 72.7
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.4e-99 365.5 272 72.1
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 3.4e-99 365.5 266 73.7
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 5.7e-99 364.8 272 72.4
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 7.5e-99 364.4 269 73.6
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 7.5e-99 364.4 270 72.2
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 7.5e-99 364.4 272 71.7
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 9.8e-99 364.0 272 72.1
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 1.3e-98 363.6 269 71.0
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 2.2e-98 362.8 269 70.3
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 2.2e-98 362.8 272 71.3
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 2.2e-98 362.8 264 73.5
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 2.8e-98 362.5 270 70.4
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 6.3e-98 361.3 270 71.1
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 8.3e-98 360.9 271 71.2
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.1e-97 360.5 273 71.8
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.1e-97 360.5 268 72.0
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 1.1e-97 360.5 266 71.4
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.1e-97 360.5 268 72.0
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 1.1e-97 360.5 266 71.4
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 1.1e-97 360.5 269 72.1
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.1e-97 360.5 272 71.3
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.4e-97 360.1 272 70.6
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 2.4e-97 359.4 272 71.7
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 3.1e-97 359.0 266 71.1
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 4.1e-97 358.6 271 70.8
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 7.0e-97 357.8 275 70.9
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 9.1e-97 357.5 268 71.3
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 9.1e-97 357.5 269 70.6
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.6e-96 356.7 271 71.6
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 1.6e-96 356.7 272 71.0
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 2.0e-96 356.3 271 69.7
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 2.0e-96 356.3 268 72.8
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.0e-96 356.3 304 65.1
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 2.0e-96 356.3 270 71.1
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 2.0e-96 356.3 266 71.1
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 2.7e-96 355.9 269 72.5
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 2.7e-96 355.9 270 70.0
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 4.5e-96 355.1 271 69.7
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 4.5e-96 355.1 269 69.1
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.0e-95 354.0 271 70.8
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.3e-95 353.6 271 71.2
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.7e-95 353.2 270 70.7
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.7e-95 353.2 268 69.4
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.3e-95 352.8 267 68.9
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 2.9e-95 352.4 288 67.4
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 3.8e-95 352.1 271 69.4
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 3.8e-95 352.1 271 69.7
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 3.8e-95 352.1 271 70.5
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 5.0e-95 351.7 269 71.4
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 8.6e-95 350.9 270 69.3
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.5e-94 350.1 271 69.0
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 2.5e-94 349.4 268 68.7
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.3e-94 349.0 270 70.4
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.2e-94 348.6 270 67.8
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 5.5e-94 348.2 268 69.4
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 7.2e-94 347.8 272 69.9
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 7.2e-94 347.8 263 70.0
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 7.2e-94 347.8 270 69.6
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 9.5e-94 347.4 272 69.1
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 9.5e-94 347.4 268 69.8
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.6e-93 346.7 272 69.5
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 2.1e-93 346.3 269 70.3
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.1e-93 346.3 268 69.8
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 2.1e-93 346.3 272 67.3
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 8.0e-93 344.4 262 69.5
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 1.0e-92 344.0 273 69.6
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 1.0e-92 344.0 268 69.0
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.0e-92 344.0 271 68.6
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 4.0e-92 342.0 272 68.8
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 5.2e-92 341.7 221 77.4
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 6.8e-92 341.3 268 68.3
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 8.9e-92 340.9 270 70.0
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 8.9e-92 340.9 265 69.4
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 1.2e-91 340.5 213 79.8
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 1.5e-91 340.1 221 78.3
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 4.4e-91 338.6 281 65.5
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 9.8e-91 337.4 331 59.8
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.3e-90 337.0 266 66.5
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 1.7e-90 336.7 276 68.8
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.2e-90 336.3 200 82.0
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 3.7e-90 335.5 265 68.3
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 4.9e-90 335.1 270 65.6
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 4.9e-90 335.1 270 66.7
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 6.3e-90 334.7 291 63.9
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 1.8e-89 333.2 202 81.7
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 5.4e-89 331.6 270 64.8
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 7.0e-89 331.3 317 59.9
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 1.2e-88 330.5 317 59.6
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 4.5e-88 328.6 245 71.0
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 3.9e-87 325.5 298 63.4
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.8e-85 319.3 264 66.7
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 3.1e-84 315.8 197 80.2
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 4.6e-80 302.0 269 62.8
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 3.9e-79 298.9 229 69.9
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 2.1e-77 293.1 217 65.9
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 4.7e-77 292.0 201 71.6
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.1e-76 290.8 214 66.8
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 4.0e-76 288.9 270 61.1
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 4.0e-76 288.9 204 67.2
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 5.2e-76 288.5 269 61.3
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 6.8e-76 288.1 261 60.9
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.2e-75 287.3 232 68.1
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.2e-75 287.3 192 76.0
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 7.5e-75 284.6 202 73.8
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.7e-74 283.5 261 59.8
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 8.3e-74 281.2 213 70.9
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 9.2e-73 277.7 275 57.1
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 2.3e-71 273.1 164 81.1
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 7.3e-62 241.5 191 66.0
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.1e-60 237.7 188 69.7
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.3e-55 220.7 212 51.9
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 2.8e-53 213.0 219 50.7
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 6.4e-50 201.8 154 66.9
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 7.1e-49 198.4 219 50.2
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.3e-47 194.1 182 58.2
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 2.8e-37 159.8 202 44.1
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.4e-36 157.5 268 40.3
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 1.8e-20 104.0 60 85.0
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 1.4e-17 94.4 156 42.3
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 5.1e-15 85.9 107 48.6
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 2.0e-11 73.9 42 83.3
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 4.5e-11 72.8 42 81.0
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 5.9e-11 72.4 39 89.7
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 5.0e-10 69.3 42 81.0


User provided reference genes

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