Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 5.3e-122 441.0 224 100.0
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 1.5e-79 300.1 224 70.1
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 1.9e-79 299.7 224 70.1
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 5.0e-72 275.0 228 63.2
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 3.5e-57 225.7 226 50.0
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 3.9e-56 222.2 219 51.6
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.2e-54 217.2 224 51.3
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 5.2e-53 211.8 224 48.7
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 2.6e-52 209.5 218 46.8
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 4.4e-52 208.8 224 48.2
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 5.8e-52 208.4 218 47.2
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 7.6e-52 208.0 218 45.9
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 2.9e-51 206.1 221 47.1
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 1.9e-50 203.4 218 47.7
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 9.3e-50 201.1 228 46.1
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 3.5e-49 199.1 222 46.8
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 3.5e-49 199.1 220 46.4
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.3e-48 197.2 222 48.2
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.3e-48 197.2 222 48.2
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.3e-48 197.2 221 44.3
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 2.3e-48 196.4 219 48.9
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 3.0e-48 196.1 235 43.8
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 6.6e-48 194.9 225 48.4
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 6.6e-48 194.9 220 46.4
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 8.7e-48 194.5 228 43.0
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.1e-47 194.1 220 46.8
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.9e-47 193.4 225 46.7
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 1.9e-47 193.4 223 46.2
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 4.3e-47 192.2 223 43.9
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 4.3e-47 192.2 218 45.0
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 5.6e-47 191.8 225 48.4
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 1.3e-46 190.7 223 45.3
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.3e-46 190.7 221 44.8
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 2.8e-46 189.5 214 45.8
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 8.1e-46 188.0 213 43.7
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.4e-45 187.2 215 48.4
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 1.8e-45 186.8 222 42.8
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 5.3e-45 185.3 247 40.1
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 4.4e-44 182.2 211 46.4
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 9.9e-44 181.0 218 43.1
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 2.9e-43 179.5 230 43.0
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 6.4e-43 178.3 219 39.7
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 6.4e-43 178.3 211 48.3
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 6.4e-43 178.3 216 42.6
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 8.4e-43 177.9 218 41.7
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 1.9e-42 176.8 213 42.3
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 4.2e-42 175.6 218 43.1
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 5.4e-42 175.3 213 40.8
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 7.1e-42 174.9 223 44.8
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 2.1e-41 173.3 221 43.4
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.1e-41 173.3 221 42.5
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.6e-41 172.2 219 42.5
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 6.0e-41 171.8 211 45.0
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 6.0e-41 171.8 219 43.8
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 1.7e-40 170.2 225 41.3
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.3e-40 169.9 224 43.8
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 5.1e-40 168.7 207 44.0
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 6.6e-40 168.3 220 40.5
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 6.6e-40 168.3 216 42.6
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 7.4e-39 164.9 208 46.6
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 9.6e-39 164.5 216 42.6
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 9.6e-39 164.5 220 42.3
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.3e-38 164.1 216 42.6
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 2.1e-38 163.3 200 45.5
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 4.8e-38 162.2 232 40.5
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 4.8e-38 162.2 221 41.2
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 4.8e-38 162.2 204 46.1
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 4.8e-38 162.2 203 43.8
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.4e-37 160.6 256 40.2
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 1.8e-37 160.2 231 39.8
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 1.8e-37 160.2 231 39.8
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 4.0e-37 159.1 231 39.4
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 4.0e-37 159.1 231 39.4
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.0e-37 159.1 208 44.7
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 6.9e-37 158.3 218 40.8
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 6.9e-37 158.3 236 36.4
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 9.0e-37 157.9 243 41.2
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.2e-36 157.5 206 42.7
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.5e-36 157.1 208 42.3
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 2.0e-36 156.8 206 43.2
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 2.0e-36 156.8 218 40.4
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 3.4e-36 156.0 230 34.8
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 3.4e-36 156.0 219 40.2
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 4.5e-36 155.6 218 40.4
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 5.8e-36 155.2 211 43.1
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.8e-35 152.5 207 44.0
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 1.1e-34 151.0 216 39.4
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.4e-34 150.6 183 44.3
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 4.2e-34 149.1 252 37.7
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 4.2e-34 149.1 206 41.7
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 7.1e-34 148.3 238 39.1
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 9.3e-34 147.9 222 39.6
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 9.3e-34 147.9 227 37.4
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 1.6e-33 147.1 206 40.3
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.1e-33 146.7 206 41.7
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.7e-33 146.4 242 38.0
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.5e-33 146.0 198 43.9
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 7.9e-33 144.8 217 36.4
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 1.3e-32 144.1 223 39.9
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 1.8e-32 143.7 225 37.3
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 3.9e-32 142.5 218 37.6
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 1.5e-31 140.6 175 44.0
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 3.3e-31 139.4 236 35.2
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.7e-30 136.0 217 35.9
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 1.4e-29 134.0 202 40.6
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 1.8e-29 133.7 205 38.0
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.8e-29 133.7 230 36.5
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.8e-29 133.7 247 34.8
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 3.1e-29 132.9 176 40.3
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 4.0e-29 132.5 118 55.1
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.2e-28 131.0 223 36.3
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 7.6e-28 128.3 211 37.4
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 1.3e-27 127.5 204 37.7
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 2.2e-27 126.7 240 35.0
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 2.2e-27 126.7 219 34.2
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 6.5e-27 125.2 131 50.4
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 1.1e-26 124.4 220 35.9
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 3.2e-26 122.9 230 33.0
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 3.2e-26 122.9 230 33.0
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 4.2e-26 122.5 179 37.4
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.6e-25 120.6 121 45.5
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 2.3e-24 116.7 204 36.3
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 1.1e-23 114.4 194 35.6
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 1.1e-21 107.8 106 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.4e-21 106.7 210 31.4
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 4.1e-21 105.9 128 45.3
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 2.0e-20 103.6 223 28.3
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 1.3e-19 100.9 82 58.5
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 8.5e-19 98.2 165 33.3
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 1.6e-17 94.0 171 33.3
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.8e-16 90.5 83 49.4
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.5e-15 86.7 65 66.2
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 4.3e-15 85.9 124 43.5
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 5.7e-15 85.5 86 48.8
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 3.7e-14 82.8 67 58.2
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 6.9e-13 78.6 111 38.7
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.2e-12 77.8 57 63.2
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.2e-12 77.8 57 63.2
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 1.0e-11 74.7 61 57.4
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 2.2e-11 73.6 127 39.4
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 5.5e-10 68.9 107 35.5
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 7.2e-10 68.6 61 52.5
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.8e-08 63.9 127 33.9
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.8e-06 55.8 211 25.6


User provided reference genes

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