Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 5.8e-86 320.9 161 100.0
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 3.6e-56 221.9 204 62.7
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.5e-46 189.9 208 55.3
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 5.8e-46 188.0 207 56.0
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 5.8e-46 188.0 207 56.0
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 3.9e-42 175.3 113 77.9
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 6.7e-42 174.5 208 51.0
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 3.3e-41 172.2 209 54.5
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 3.3e-41 172.2 207 50.2
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 2.0e-38 162.9 184 53.8
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 8.4e-37 157.5 185 50.8
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 5.5e-36 154.8 192 50.5
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.1e-35 152.9 176 51.1
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 6.0e-35 151.4 194 47.9
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.0e-34 150.6 194 47.4
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 2.3e-34 149.4 114 67.5
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.3e-34 149.4 192 49.0
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 3.9e-34 148.7 187 49.2
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 6.7e-34 147.9 210 46.7
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.9e-33 146.4 192 46.9
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.9e-33 146.4 192 48.4
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 5.7e-33 144.8 193 47.7
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 9.7e-33 144.1 209 44.5
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.3e-32 143.7 112 65.2
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.3e-32 143.7 101 70.3
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.3e-32 143.7 109 69.7
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.6e-32 143.3 106 67.0
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 2.8e-32 142.5 106 67.0
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 6.3e-32 141.4 131 60.3
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 8.2e-32 141.0 103 68.0
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.1e-31 140.6 106 67.0
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 1.1e-31 140.6 103 68.0
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.8e-31 139.8 114 64.9
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 1.8e-31 139.8 114 64.9
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 3.1e-31 139.0 114 64.0
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 5.3e-31 138.3 106 65.1
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.5e-30 136.7 175 50.3
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.0e-30 136.3 113 62.8
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.0e-30 136.3 113 62.8
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 2.6e-30 136.0 114 64.0
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.5e-30 135.2 113 62.8
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 4.5e-30 135.2 134 57.5
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 7.6e-30 134.4 109 63.3
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.0e-29 134.0 113 61.9
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.0e-29 134.0 114 62.3
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 1.3e-29 133.7 114 63.2
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.3e-29 133.7 113 61.9
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.7e-29 133.3 114 64.0
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.8e-29 132.1 113 61.1
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 8.5e-29 131.0 95 73.7
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.1e-28 130.6 119 59.7
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.1e-28 130.6 119 59.7
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.4e-28 130.2 122 58.2
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.9e-28 129.8 114 62.3
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 2.5e-28 129.4 116 60.3
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 3.2e-28 129.0 127 55.9
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 3.2e-28 129.0 116 61.2
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.2e-28 128.6 114 61.4
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 7.2e-28 127.9 131 58.8
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.2e-28 127.9 188 45.7
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 9.3e-28 127.5 118 59.3
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 9.3e-28 127.5 96 69.8
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.2e-27 127.1 130 56.2
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.6e-27 126.7 118 57.6
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.6e-27 126.7 111 64.9
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.1e-27 126.3 114 59.6
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.7e-27 125.9 114 59.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.6e-27 125.6 118 56.8
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 4.6e-27 125.2 134 55.2
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 4.6e-27 125.2 131 54.2
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 4.6e-27 125.2 129 56.6
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.1e-27 124.8 114 58.8
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.0e-26 124.0 111 61.3
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.3e-26 123.6 116 58.6
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.3e-26 123.6 81 79.0
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.8e-26 123.2 105 63.8
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.8e-26 123.2 209 42.6
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.3e-26 122.9 106 64.2
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.3e-26 122.9 119 55.5
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 3.0e-26 122.5 81 80.2
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 3.9e-26 122.1 130 55.4
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 5.1e-26 121.7 131 55.0
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 5.1e-26 121.7 127 55.1
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 5.1e-26 121.7 129 51.2
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 6.7e-26 121.3 107 61.7
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.5e-25 120.2 80 76.2
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 2.5e-25 119.4 120 58.3
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.5e-25 119.4 88 73.9
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 3.3e-25 119.0 111 60.4
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.3e-25 118.6 81 76.5
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 7.4e-25 117.9 80 76.2
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 7.4e-25 117.9 108 61.1
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 9.7e-25 117.5 117 56.4
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 9.7e-25 117.5 116 54.3
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 9.7e-25 117.5 89 69.7
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.3e-24 117.1 81 75.3
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 2.2e-24 116.3 117 57.3
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 4.8e-24 115.2 109 59.6
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.1e-23 114.0 188 44.1
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.8e-23 113.2 59 89.8
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.4e-23 112.8 89 68.5
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.1e-23 112.1 121 57.0
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.9e-23 111.3 209 40.2
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.2e-22 110.5 119 54.6
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.6e-22 109.4 110 56.4
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 3.4e-22 109.0 109 57.8
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 3.4e-22 109.0 129 52.7
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 3.4e-22 109.0 136 49.3
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 1.0e-21 107.5 88 65.9
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 1.3e-21 107.1 140 47.1
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.7e-21 106.7 111 54.1
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.2e-21 106.3 152 46.7
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 2.9e-21 105.9 92 59.8
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.9e-21 105.9 113 54.0
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 3.8e-21 105.5 81 71.6
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 3.8e-21 105.5 89 61.8
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 5.0e-21 105.1 100 59.0
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 5.0e-21 105.1 90 65.6
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 1.1e-20 104.0 106 54.7
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.1e-20 104.0 148 41.2
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 1.4e-20 103.6 57 82.5
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.9e-20 103.2 106 54.7
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 1.9e-20 103.2 106 54.7
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.9e-20 103.2 198 39.4
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 2.5e-20 102.8 105 53.3
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 2.5e-20 102.8 116 50.0
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 3.2e-20 102.4 56 83.9
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 3.2e-20 102.4 111 51.4
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 4.2e-20 102.1 58 81.0
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 9.4e-20 100.9 77 66.2
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.1e-19 99.8 66 77.3
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.7e-19 99.4 120 51.7
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.7e-19 99.4 137 46.7
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.7e-19 99.4 58 79.3
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.6e-19 99.0 137 45.3
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 4.7e-19 98.6 133 48.1
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 4.7e-19 98.6 58 79.3
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 6.1e-19 98.2 111 54.1
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.3e-18 96.3 135 45.9
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 3.0e-18 95.9 51 86.3
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 3.9e-18 95.5 57 80.7
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 5.1e-18 95.1 129 48.8
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 5.7e-17 91.7 58 74.1
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 5.7e-17 91.7 49 85.7
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 7.4e-17 91.3 91 56.0
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 7.4e-17 91.3 91 54.9
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.7e-16 90.1 148 44.6
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.2e-16 89.7 133 47.4
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 4.8e-16 88.6 118 45.8
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 4.8e-16 88.6 51 84.3
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 6.3e-16 88.2 132 46.2
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 6.3e-16 88.2 67 67.2
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.4e-15 87.0 50 86.0
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 4.1e-15 85.5 139 40.3
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.3e-13 80.5 79 58.2
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 2.5e-12 76.3 38 92.1
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 4.7e-11 72.0 81 53.1
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.8e-10 70.1 70 54.3
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.8e-10 70.1 70 54.3
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 3.0e-10 69.3 38 81.6
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.2e-06 57.4 66 47.0


User provided reference genes

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