Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 3.4e-89 331.6 167 100.0
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 2.9e-56 222.2 151 80.8
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.9e-56 222.2 151 80.8
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 3.8e-56 221.9 150 80.7
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 3.8e-56 221.9 150 80.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 6.4e-56 221.1 157 77.7
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 6.4e-56 221.1 157 77.7
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 3.0e-53 212.2 163 70.6
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 3.0e-53 212.2 157 75.2
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.8e-51 205.7 163 68.7
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 3.1e-50 202.2 164 68.9
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 4.9e-48 194.9 164 64.0
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 6.0e-46 188.0 154 64.9
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.0e-45 187.2 159 63.5
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.3e-45 186.8 209 54.5
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 3.9e-45 185.3 163 62.0
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.5e-44 183.3 148 65.5
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 4.3e-44 181.8 158 61.4
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.3e-43 180.3 162 59.9
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.2e-43 179.5 163 61.3
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.8e-43 178.3 148 63.5
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 3.1e-42 175.6 160 60.0
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 4.1e-42 175.3 163 58.3
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 4.1e-42 175.3 163 58.3
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.3e-42 174.9 158 60.8
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 5.3e-42 174.9 161 59.6
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 5.3e-42 174.9 163 58.9
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 5.3e-42 174.9 156 60.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 9.0e-42 174.1 163 58.9
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 9.0e-42 174.1 128 65.6
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 1.5e-41 173.3 163 57.7
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.0e-41 172.9 163 60.7
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.6e-41 172.6 160 59.4
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 3.4e-41 172.2 101 85.1
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 3.4e-41 172.2 168 56.0
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 4.5e-41 171.8 165 59.4
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 7.6e-41 171.0 164 59.1
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.0e-40 170.6 168 56.5
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.0e-40 170.6 140 65.0
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.0e-40 170.6 140 65.0
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.0e-40 170.6 163 58.9
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.0e-40 170.6 127 69.3
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.3e-40 170.2 169 58.6
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.7e-40 169.9 161 57.8
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.7e-40 169.9 165 58.2
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 1.7e-40 169.9 163 58.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.7e-40 169.9 161 57.1
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 2.2e-40 169.5 161 57.8
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.9e-40 169.1 154 57.8
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.8e-40 168.7 161 57.8
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 5.0e-40 168.3 166 57.2
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 6.5e-40 167.9 164 57.9
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 6.5e-40 167.9 161 57.1
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 6.5e-40 167.9 163 56.4
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.1e-39 167.2 165 55.2
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-39 167.2 99 83.8
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 1.4e-39 166.8 162 58.0
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 2.5e-39 166.0 163 55.8
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.5e-39 166.0 143 59.4
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 4.2e-39 165.2 163 57.7
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 7.2e-39 164.5 165 55.8
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 7.2e-39 164.5 139 61.2
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 9.3e-39 164.1 164 56.7
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 9.3e-39 164.1 164 56.7
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.2e-38 163.7 164 56.1
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.6e-38 163.3 101 78.2
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 4.6e-38 161.8 138 59.4
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 6.1e-38 161.4 101 76.2
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 6.1e-38 161.4 198 48.0
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 7.9e-38 161.0 163 57.1
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 7.9e-38 161.0 101 76.2
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 7.9e-38 161.0 162 56.2
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.0e-37 160.6 166 54.2
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.4e-37 160.2 156 59.6
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.8e-37 159.8 163 55.8
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.8e-37 159.8 128 61.7
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 5.1e-37 158.3 107 73.8
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 5.1e-37 158.3 126 63.5
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 5.1e-37 158.3 101 73.3
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 5.1e-37 158.3 101 74.3
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 6.7e-37 157.9 135 60.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 8.8e-37 157.5 168 53.0
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.1e-36 157.1 101 73.3
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.1e-36 157.1 153 57.5
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.5e-36 156.8 125 64.0
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.5e-36 156.8 125 64.0
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.9e-36 156.4 106 70.8
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.9e-36 156.4 141 58.9
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.9e-36 156.4 101 74.3
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 5.7e-36 154.8 100 75.0
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 5.7e-36 154.8 149 57.7
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 7.4e-36 154.5 133 59.4
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 7.4e-36 154.5 156 59.0
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.3e-35 153.7 101 73.3
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.3e-35 153.7 101 73.3
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.3e-35 153.7 156 56.4
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.7e-35 153.3 162 53.7
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.7e-35 153.3 107 69.2
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.7e-35 153.3 164 52.4
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 2.2e-35 152.9 165 52.7
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 2.2e-35 152.9 101 69.3
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 2.2e-35 152.9 100 73.0
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 3.7e-35 152.1 133 58.6
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 3.7e-35 152.1 101 71.3
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 4.8e-35 151.8 101 68.3
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 4.8e-35 151.8 101 73.3
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 4.8e-35 151.8 150 53.3
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-34 150.6 107 68.2
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.1e-34 150.6 153 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.8e-34 149.8 101 69.3
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.8e-34 149.8 101 68.3
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.8e-34 149.8 173 49.7
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.8e-34 149.8 100 74.0
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 2.4e-34 149.4 172 50.0
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 3.1e-34 149.1 106 67.9
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 5.3e-34 148.3 157 53.5
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 5.3e-34 148.3 107 65.4
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 6.9e-34 147.9 106 67.0
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 6.9e-34 147.9 100 72.0
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 9.1e-34 147.5 169 50.9
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 9.1e-34 147.5 173 49.7
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 9.1e-34 147.5 118 61.9
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.2e-33 147.1 101 66.3
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.5e-33 146.7 136 53.7
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.5e-33 146.7 118 60.2
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.5e-33 146.7 85 81.2
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.5e-33 146.7 100 69.0
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 2.0e-33 146.4 146 56.2
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.6e-33 146.0 101 65.3
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 3.4e-33 145.6 101 66.3
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.5e-33 145.2 101 70.3
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 5.9e-33 144.8 135 56.3
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 7.7e-33 144.4 158 52.5
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.0e-32 144.1 162 49.4
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.9e-32 142.5 138 54.3
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 5.0e-32 141.7 101 69.3
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 5.0e-32 141.7 100 69.0
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 6.5e-32 141.4 96 71.9
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.1e-31 140.6 125 57.6
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.2e-30 137.1 85 74.1
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.8e-29 133.3 134 58.2
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 5.1e-29 131.7 101 62.4
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.0e-28 129.8 122 55.7
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 5.7e-28 128.3 75 80.0
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.7e-27 126.7 143 49.7
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.1e-26 124.0 82 73.2
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.1e-26 122.1 101 60.4
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 3.6e-22 109.0 83 65.1
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 8.0e-22 107.8 131 50.4
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 1.5e-20 103.6 66 71.2
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 4.4e-20 102.1 74 67.6
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 5.9e-17 91.7 54 79.6
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 5.9e-17 91.7 135 42.2
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 3.8e-16 89.0 52 80.8
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 9.4e-15 84.3 102 39.2
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 3.6e-14 82.4 57 64.9
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 5.7e-12 75.1 100 49.0
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.7e-11 73.6 78 44.9
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 6.3e-11 71.6 80 51.2
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 8.2e-11 71.2 128 34.4
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 7.0e-10 68.2 37 78.4
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.2e-09 67.4 75 49.3


User provided reference genes

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