Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 2448.7 1230 100.0
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1757.7 1213 74.1
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1721.4 1223 71.3
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1622.1 1190 70.3
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1517.7 1194 65.7
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1493.4 1217 62.4
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 1475.3 1192 62.6
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 1469.1 1192 62.2
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 1467.2 1192 62.2
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1462.2 1189 63.2
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1460.7 1192 62.1
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1453.3 1192 61.4
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1451.0 1196 62.5
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 1447.2 1192 61.5
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1442.6 1186 62.8
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1432.2 1176 63.1
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 1424.8 1193 61.1
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1404.8 1206 60.2
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1396.7 1201 60.0
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1393.3 1209 59.4
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1389.4 1198 60.9
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1389.0 1193 59.5
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1384.8 1202 59.7
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1382.9 1193 60.4
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 1381.3 1209 59.9
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1380.9 1210 60.1
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1370.9 1195 59.2
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1367.8 1195 59.2
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1365.9 1187 59.6
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 1356.7 1196 58.5
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 0.0e+00 1355.9 1196 60.8
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1354.7 1203 58.5
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1354.7 1194 58.4
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1351.7 1192 58.6
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1348.6 1194 58.1
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1348.2 1198 58.1
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1348.2 1192 58.1
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1347.4 1197 58.4
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1346.3 1202 58.9
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 1344.7 1198 58.2
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1343.9 1202 58.8
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1343.2 1195 57.3
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1341.3 1198 57.1
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1337.8 1202 58.3
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1327.4 1199 58.0
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1326.6 1198 57.8
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1324.7 1196 57.9
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1324.3 1202 56.4
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1323.9 1200 56.9
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1320.8 1214 55.6
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1318.9 1212 57.3
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1317.4 1213 55.2
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 1314.3 1200 57.7
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1308.1 1202 57.6
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1307.0 1201 57.2
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1299.6 1204 55.9
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1298.9 1119 59.6
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 1297.0 1196 56.5
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1293.1 1218 55.3
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1291.6 1191 56.8
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1289.2 1191 55.5
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1286.2 1197 55.8
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1281.2 1197 55.7
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1280.8 1196 55.1
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1269.2 1197 55.1
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1268.4 1188 55.7
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 1268.4 1054 61.6
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1266.9 1203 55.4
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1266.1 1221 54.3
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1264.6 1198 53.7
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1263.1 1204 56.2
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1259.6 1191 55.7
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1259.2 1197 53.6
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1253.0 1209 54.8
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 1244.6 1210 54.3
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 1244.6 1315 51.6
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 1244.2 1211 54.7
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 1243.8 1213 54.7
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1234.6 1272 52.5
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1234.6 1198 53.8
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 1233.0 1211 54.3
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 1232.6 1217 53.9
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 1229.5 1080 59.1
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 1221.1 1209 54.5
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1218.4 1045 61.7
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1213.0 1266 52.1
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1211.1 1197 53.1
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1209.5 1088 59.4
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1181.4 1197 51.6
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1169.1 1191 52.4
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1083.9 1067 54.3
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 4.9e-310 1068.1 1242 46.5
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 1.2e-305 1053.5 1059 52.8
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 1.4e-304 1050.0 746 72.4
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 9.0e-272 941.0 1065 49.4
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 1.1e-245 854.4 1223 40.2
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 1.0e-238 831.2 714 60.5
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 1.4e-235 820.8 1218 39.5
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 4.8e-233 812.4 760 55.5
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 2.4e-224 783.5 1214 38.1
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 7.0e-224 781.9 808 52.8
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 3.5e-199 699.9 713 50.8
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 1.7e-198 697.6 727 51.4
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 3.1e-195 686.8 824 49.3
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 8.6e-174 615.5 534 58.4
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 5.4e-168 596.3 791 43.1
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 2.1e-164 584.3 792 43.1
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 1.4e-155 555.1 456 62.5
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 1.2e-146 525.4 1371 29.0
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 3.5e-143 513.8 439 58.3
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 2.2e-124 451.4 446 54.0
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 1.5e-109 402.1 454 48.9
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 4.0e-102 377.5 672 34.4
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 1.1e-96 359.4 435 46.9
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 9.2e-83 313.2 350 50.3
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 1.8e-62 245.7 305 45.2
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 1.2e-53 216.5 1275 22.7
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 8.1e-47 193.7 377 36.3
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 9.0e-46 190.3 227 47.6
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 3.7e-39 168.3 113 66.4
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 5.3e-38 164.5 218 47.2
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 6.0e-34 151.0 152 53.9
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 5.6e-32 144.4 118 57.6
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 1.9e-27 129.4 364 27.5


User provided reference genes

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