Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 5.4e-173 610.9 314 100.0
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 6.1e-148 527.7 314 85.4
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 6.1e-124 448.0 319 71.2
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.4e-123 446.8 316 73.1
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 2.6e-114 416.0 319 68.0
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 8.5e-110 401.0 320 66.2
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 2.2e-89 333.2 318 56.0
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.5e-85 319.7 315 54.6
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 7.3e-85 318.2 319 56.1
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.1e-84 316.6 316 51.6
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.1e-84 316.6 321 54.5
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 3.6e-84 315.8 316 54.1
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.2e-83 312.0 316 54.1
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.8e-83 311.6 330 50.0
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 2.6e-82 309.7 311 54.3
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.3e-81 307.4 297 54.5
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.4e-80 303.9 319 54.5
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.4e-80 303.9 318 54.1
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 2.4e-80 303.1 320 53.8
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 5.4e-80 302.0 321 54.5
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 5.1e-78 295.4 316 49.1
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-77 294.3 316 49.1
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.9e-77 293.5 298 53.0
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 3.3e-77 292.7 316 53.8
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 4.3e-77 292.4 311 51.8
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 9.5e-77 291.2 301 52.5
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 9.5e-77 291.2 317 48.9
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 2.8e-76 289.7 320 52.2
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 2.8e-76 289.7 309 50.2
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.8e-76 289.7 331 51.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.6e-76 289.3 308 48.1
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.1e-75 287.7 307 48.2
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.1e-75 287.7 308 48.1
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 2.3e-75 286.6 280 55.0
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 8.9e-75 284.6 321 48.9
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-74 284.3 330 46.7
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.2e-74 284.3 317 52.4
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.5e-74 283.9 317 52.1
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 2.6e-74 283.1 316 49.7
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 2.6e-74 283.1 324 47.8
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 3.4e-74 282.7 320 49.4
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 4.4e-74 282.3 323 50.2
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.3e-73 280.8 301 52.5
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 2.2e-73 280.0 320 47.5
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.2e-73 280.0 323 50.2
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.2e-73 280.0 321 49.2
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.4e-72 277.3 310 48.7
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 4.1e-72 275.8 320 49.1
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.1e-72 275.8 325 49.5
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 7.1e-72 275.0 318 48.4
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 7.1e-72 275.0 312 48.7
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 3.5e-71 272.7 267 53.2
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 7.8e-71 271.6 323 48.0
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.0e-70 271.2 298 50.0
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.0e-70 271.2 298 50.0
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.0e-70 271.2 298 50.0
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 3.9e-70 269.2 323 44.9
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 3.9e-70 269.2 325 49.2
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.9e-70 269.2 362 46.4
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 6.6e-70 268.5 325 47.4
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 8.6e-70 268.1 298 50.3
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 8.6e-70 268.1 312 48.1
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.9e-69 266.9 292 50.3
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.9e-69 266.9 323 47.1
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 2.5e-69 266.5 319 48.6
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 2.5e-69 266.5 319 48.6
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.3e-69 266.2 296 48.6
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.3e-69 266.2 323 47.7
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 4.3e-69 265.8 321 45.5
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 5.6e-69 265.4 299 49.8
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 7.3e-69 265.0 319 49.5
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 9.6e-69 264.6 319 49.2
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.6e-68 263.8 300 50.0
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.8e-68 263.1 258 57.8
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 3.6e-68 262.7 326 48.2
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 4.7e-68 262.3 298 49.0
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.1e-67 261.2 298 47.7
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.8e-67 260.4 319 47.0
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.8e-67 260.4 328 46.6
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.8e-67 260.4 297 49.8
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 2.4e-67 260.0 296 48.6
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.1e-67 259.6 307 47.9
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 3.1e-67 259.6 258 57.4
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 4.0e-67 259.2 321 47.0
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 4.0e-67 259.2 321 47.0
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.0e-67 259.2 316 49.1
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.2e-66 257.7 299 47.5
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.2e-66 257.7 320 44.1
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.5e-66 257.3 310 45.8
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.0e-66 256.9 321 46.7
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 2.0e-66 256.9 297 49.5
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.0e-66 256.9 318 46.9
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 2.0e-66 256.9 316 44.6
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 2.6e-66 256.5 335 49.0
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 3.4e-66 256.1 321 46.1
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 5.8e-66 255.4 299 49.2
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 5.8e-66 255.4 321 46.7
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 5.8e-66 255.4 309 45.0
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 7.6e-66 255.0 320 47.2
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 7.6e-66 255.0 322 48.4
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 9.9e-66 254.6 295 47.5
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.3e-65 254.2 321 46.4
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.3e-65 254.2 298 46.3
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 2.2e-65 253.4 310 44.8
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.9e-65 253.1 287 49.1
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.9e-65 253.1 321 44.9
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 4.9e-65 252.3 324 47.2
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 4.9e-65 252.3 324 47.2
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 4.9e-65 252.3 324 47.2
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 8.4e-65 251.5 313 47.6
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.9e-64 250.4 321 48.0
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.2e-64 249.6 324 45.7
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 3.2e-64 249.6 325 46.5
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.2e-63 247.7 310 47.4
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.7e-63 246.5 327 45.0
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 6.0e-63 245.4 368 42.4
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.0e-62 244.6 315 42.2
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 9.6e-61 238.0 298 46.6
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.1e-60 236.9 262 49.2
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 2.8e-60 236.5 260 46.9
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 8.1e-60 235.0 321 41.4
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.1e-59 234.6 415 38.6
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.4e-59 234.2 309 43.7
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 2.4e-59 233.4 286 44.8
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 4.0e-59 232.6 312 42.6
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.0e-58 230.3 282 45.4
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 9.9e-58 228.0 256 50.8
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.3e-57 227.6 317 43.5
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 3.2e-56 223.0 316 40.5
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 4.2e-56 222.6 319 42.0
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 5.4e-56 222.2 320 43.1
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.5e-55 219.5 320 42.5
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 4.6e-55 219.2 314 40.1
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 6.2e-52 208.8 324 41.4
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 8.4e-49 198.4 321 41.7
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 3.2e-48 196.4 224 49.1
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.4e-43 180.3 248 39.5
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.4e-40 171.0 216 48.1
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 4.2e-32 142.9 323 31.3
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.0e-30 138.3 163 47.2
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 3.0e-30 136.7 165 46.1
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 5.7e-29 132.5 320 29.1
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.4e-27 127.9 322 31.4
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 3.1e-27 126.7 170 43.5
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 8.5e-25 118.6 313 30.7
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.4e-22 111.3 192 35.9
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.3e-21 106.3 116 51.7
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.9e-17 93.6 134 38.1
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.5e-17 92.0 134 37.3
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 7.2e-16 89.0 89 49.4
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 4.8e-12 76.3 86 43.0
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.2e-12 75.5 86 38.4
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.2e-12 75.5 86 38.4
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 2.6e-10 70.5 92 38.0
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.3e-09 68.2 69 43.5
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 1.3e-09 68.2 69 43.5
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.8e-09 66.6 100 33.0
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.9e-08 64.3 80 40.0
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.4e-06 58.2 132 31.8
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 2.3e-06 57.4 98 34.7
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 5.2e-06 56.2 43 65.1


User provided reference genes

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