Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 0.0e+00 1687.9 866 100.0
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 3.5e-89 334.0 277 63.9
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 3.4e-84 317.4 291 60.8
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 6.3e-78 296.6 276 56.9
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 8.2e-78 296.2 291 55.7
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 1.5e-76 292.0 282 56.0
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 1.0e-75 289.3 276 58.0
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 5.0e-75 287.0 284 56.7
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 1.9e-74 285.0 281 53.4
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 1.9e-74 285.0 282 54.3
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 1.9e-74 285.0 282 54.3
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 5.5e-74 283.5 276 53.3
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 1.0e-72 279.3 280 56.1
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 3.0e-72 277.7 280 55.4
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 1.1e-71 275.8 287 55.1
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 3.3e-71 274.2 282 52.1
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 7.4e-71 273.1 277 55.6
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 9.7e-71 272.7 287 53.0
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 1.7e-70 271.9 285 54.0
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 1.7e-70 271.9 285 54.0
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 6.3e-70 270.0 317 47.3
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 6.3e-70 270.0 281 53.0
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 8.2e-70 269.6 274 53.6
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 1.4e-69 268.9 287 54.0
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 3.1e-69 267.7 279 51.6
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 4.1e-69 267.3 275 53.8
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 1.2e-68 265.8 279 53.0
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 1.5e-68 265.4 277 53.1
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 1.5e-68 265.4 283 50.9
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 2.6e-68 264.6 283 52.7
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 4.5e-68 263.8 275 52.7
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 4.5e-68 263.8 287 50.2
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 5.9e-68 263.5 278 54.0
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 1.7e-67 261.9 281 52.3
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 3.8e-67 260.8 273 51.6
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 5.0e-67 260.4 274 52.9
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 1.1e-66 259.2 287 51.9
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 1.4e-66 258.8 277 52.3
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 3.2e-66 257.7 282 51.4
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 7.2e-66 256.5 276 51.1
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 7.2e-66 256.5 277 52.0
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 9.4e-66 256.1 288 51.4
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 2.1e-65 255.0 280 51.1
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 2.1e-65 255.0 282 52.1
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 2.7e-65 254.6 281 49.8
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 4.7e-65 253.8 280 49.3
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 1.4e-64 252.3 265 52.8
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.4e-64 252.3 279 50.2
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 1.4e-64 252.3 274 51.5
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.4e-64 252.3 283 48.8
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 1.4e-64 252.3 276 49.6
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 1.8e-64 251.9 290 50.7
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 3.0e-64 251.1 272 51.5
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 3.0e-64 251.1 299 49.2
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 5.1e-64 250.4 280 50.4
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 8.8e-64 249.6 291 46.4
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 2.0e-63 248.4 274 50.4
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 3.3e-63 247.7 274 52.2
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 7.4e-63 246.5 279 50.9
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 9.7e-63 246.1 219 58.4
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.7e-62 245.4 272 52.6
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.7e-62 245.4 288 50.3
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 1.7e-62 245.4 272 51.1
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 2.8e-62 244.6 272 50.7
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 2.8e-62 244.6 225 58.2
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 3.7e-62 244.2 278 51.1
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 8.2e-62 243.0 272 52.6
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 4.1e-61 240.7 272 50.7
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 4.1e-61 240.7 290 46.2
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 9.1e-61 239.6 277 49.1
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 1.2e-60 239.2 263 52.9
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 1.2e-60 239.2 262 53.4
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 5.9e-60 236.9 320 45.3
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 5.9e-60 236.9 292 44.5
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 7.7e-60 236.5 287 48.8
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 1.3e-59 235.7 234 54.3
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 3.8e-59 234.2 301 44.9
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 1.9e-58 231.9 243 55.1
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 2.1e-57 228.4 211 55.0
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 8.0e-57 226.5 211 55.9
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 8.0e-57 226.5 247 53.0
Os07g0119475 Oryza sativa ssp. japonica HOM05D016329 ORTHO05D008805 3.0e-56 224.6 415 41.9
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 2.8e-54 218.0 282 44.0
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 5.3e-53 213.8 274 45.3
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.6e-49 202.2 276 44.2
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 1.0e-48 199.5 217 48.4
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.7e-46 192.2 291 40.9
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 7.0e-45 186.8 167 56.9
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 7.7e-44 183.3 285 44.2
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.3e-43 182.6 219 51.6
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 1.3e-43 182.6 211 50.7
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 2.9e-43 181.4 167 59.9
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.1e-42 179.5 219 50.7
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 1.9e-42 178.7 284 41.9
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 1.6e-41 175.6 223 48.4
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 2.1e-41 175.3 215 48.8
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.4e-40 172.6 229 45.9
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 5.4e-37 160.6 282 35.1
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 2.0e-36 158.7 150 57.3
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 7.2e-34 150.2 211 46.9
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 2.8e-33 148.3 150 54.7
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 5.2e-32 144.1 204 42.6
Os01g0816850 Oryza sativa ssp. japonica HOM05D016329 ORTHO05D049739 8.3e-30 136.7 249 43.4
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 1.7e-27 129.0 151 49.0
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 1.7e-27 129.0 273 35.5
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 3.9e-27 127.9 157 47.8
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 6.6e-27 127.1 155 51.0
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 8.6e-27 126.7 162 47.5
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-25 122.1 97 56.7
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 7.0e-21 107.1 153 40.5
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.3e-19 102.8 69 68.1
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.6e-17 94.7 69 66.7
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 4.7e-17 94.4 204 32.4
Zm00001eb352170 Zea mays HOM05D016329 ORTHO05D049739 2.4e-13 82.0 74 60.8
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 1.1e-10 73.2 158 32.3
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 1.1e-10 73.2 246 28.5
SGA_v2.0_scaffold126G33897 Striga asiatica HOM05D003201 ORTHO05D402977 4.0e-08 64.7 117 36.8
Os07g0510866 Oryza sativa ssp. japonica HOM05D016329 ORTHO05D294990 9.9e-07 60.1 62 53.2
CBR_g45547 Chara braunii HOM05D003201 ORTHO05D008805 4.9e-06 57.8 258 24.8


User provided reference genes

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