Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 3.4e-138 495.0 249 100.0
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 5.9e-98 361.3 285 70.2
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 3.5e-82 308.9 239 68.2
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 1.1e-78 297.4 243 64.6
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.5e-72 276.2 247 64.4
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.4e-70 269.6 235 63.4
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 4.2e-67 258.8 234 58.1
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.0e-65 254.2 227 60.8
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 2.3e-65 253.1 217 63.1
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.0e-65 252.7 236 58.9
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 3.0e-65 252.7 236 61.0
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 3.9e-65 252.3 195 67.7
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 6.6e-65 251.5 228 58.8
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 1.5e-64 250.4 232 62.1
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 5.6e-64 248.4 206 63.1
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 9.6e-64 247.7 239 58.2
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.3e-63 247.3 206 62.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.6e-63 246.9 239 57.7
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 1.6e-63 246.9 230 60.0
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.1e-63 246.5 231 58.4
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 2.1e-63 246.5 240 59.6
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 8.1e-63 244.6 194 63.9
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.4e-62 243.8 195 66.2
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.8e-62 243.4 191 66.0
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 3.1e-62 242.7 196 65.3
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 4.0e-62 242.3 244 54.9
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 5.3e-62 241.9 190 65.8
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 5.3e-62 241.9 231 59.3
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.5e-61 240.4 199 65.3
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.5e-61 240.4 187 66.3
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.6e-61 239.6 187 66.8
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 2.6e-61 239.6 227 59.5
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 3.4e-61 239.2 239 56.9
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 3.4e-61 239.2 189 65.1
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.5e-61 238.8 231 57.1
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 4.5e-61 238.8 240 55.0
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 4.5e-61 238.8 231 56.7
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 4.5e-61 238.8 231 56.7
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 5.8e-61 238.4 239 56.9
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 5.8e-61 238.4 236 57.2
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 2.2e-60 236.5 231 56.3
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 2.9e-60 236.1 210 61.4
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 2.9e-60 236.1 240 56.2
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 3.8e-60 235.7 199 64.8
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 8.4e-60 234.6 228 56.1
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 8.4e-60 234.6 196 63.8
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.4e-59 233.8 239 56.9
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 1.9e-59 233.4 183 68.3
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 2.4e-59 233.0 218 59.2
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 4.2e-59 232.3 233 56.7
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 5.4e-59 231.9 229 57.6
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 7.1e-59 231.5 238 56.3
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 9.3e-59 231.1 232 55.6
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 9.3e-59 231.1 222 58.1
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.2e-58 230.7 224 58.5
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.6e-58 230.3 205 61.5
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.6e-58 230.3 189 63.0
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 2.1e-58 229.9 234 53.4
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.1e-58 229.9 189 63.5
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 2.7e-58 229.6 225 56.9
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 3.5e-58 229.2 198 62.6
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 6.0e-58 228.4 227 56.4
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 6.0e-58 228.4 228 56.6
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 7.9e-58 228.0 198 61.1
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 7.9e-58 228.0 216 57.9
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.0e-57 227.6 236 54.2
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.0e-57 227.6 236 54.2
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.0e-57 227.6 198 63.1
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.0e-57 227.6 195 64.1
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.3e-57 227.3 193 64.2
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.8e-57 226.9 194 62.9
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.8e-57 226.9 194 62.4
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 2.3e-57 226.5 231 55.0
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.3e-57 226.5 194 61.3
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 2.3e-57 226.5 215 56.3
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 3.9e-57 225.7 242 53.3
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 5.1e-57 225.3 215 55.8
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 8.7e-57 224.6 234 52.6
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.1e-56 224.2 239 55.6
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.5e-56 223.8 194 60.3
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.5e-56 223.8 198 62.1
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.9e-56 223.4 227 55.1
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.9e-56 223.4 227 55.1
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 2.5e-56 223.0 234 53.8
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.5e-56 223.0 195 60.5
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.3e-56 222.2 198 61.1
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.3e-55 220.7 189 62.4
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 2.8e-55 219.5 193 59.1
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 3.7e-55 219.2 242 55.0
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.8e-54 216.9 236 54.2
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.8e-54 216.9 215 57.7
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 3.1e-54 216.1 195 59.5
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.2e-53 214.2 188 64.9
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 2.6e-53 213.0 240 51.7
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 4.5e-53 212.2 189 60.8
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 9.9e-53 211.1 188 63.8
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 9.9e-53 211.1 193 60.6
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.7e-52 210.3 187 59.9
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 2.2e-52 209.9 236 54.7
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.9e-52 209.5 188 63.8
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.9e-52 209.5 189 61.4
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 6.4e-52 208.4 190 59.5
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.4e-51 207.2 226 51.8
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.2e-51 206.1 226 51.8
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 4.2e-51 205.7 237 51.5
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 4.2e-51 205.7 233 50.2
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 7.1e-51 204.9 195 57.9
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 7.1e-51 204.9 184 58.2
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.6e-50 203.8 233 51.9
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.0e-49 201.1 228 53.1
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.0e-49 201.1 233 51.5
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.0e-49 201.1 233 51.5
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.8e-49 200.3 198 57.1
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 1.8e-49 200.3 203 57.1
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 3.0e-49 199.5 191 58.6
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 3.9e-49 199.1 203 56.7
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 5.1e-49 198.7 185 59.5
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.5e-48 197.2 213 51.2
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 7.4e-48 194.9 198 55.1
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 4.8e-47 192.2 189 55.0
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 6.2e-47 191.8 189 55.6
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 6.2e-47 191.8 191 58.1
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.4e-46 190.7 220 49.5
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.8e-46 190.3 216 51.4
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.4e-46 189.9 153 65.4
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 2.4e-46 189.9 189 54.0
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 2.0e-45 186.8 153 64.1
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 3.4e-45 186.0 226 48.2
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.3e-44 184.1 153 62.7
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 3.2e-43 179.5 162 59.9
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 3.2e-43 179.5 162 60.5
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 3.2e-43 179.5 162 60.5
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 6.0e-42 175.3 200 49.5
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.3e-39 167.5 146 63.0
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.0e-37 160.2 198 49.5
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 7.6e-37 158.3 187 52.4
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 2.5e-35 153.3 166 56.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.7e-34 149.8 187 46.0
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 3.6e-34 149.4 129 60.5
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 4.6e-34 149.1 191 47.6
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.8e-33 147.1 119 65.5
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.3e-31 141.0 115 66.1
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.1e-30 137.9 104 68.3
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.6e-29 133.3 196 40.8
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.4e-29 132.9 184 45.7
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.1e-27 127.9 191 44.0
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 1.6e-26 124.0 88 70.5
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.6e-26 122.9 185 42.7
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.8e-22 110.5 83 66.3
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 4.1e-22 109.4 86 66.3
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.5e-19 100.1 192 35.4
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 7.4e-16 88.6 83 56.6
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 1.0e-12 78.2 94 46.8
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.4e-08 62.8 167 36.5
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 7.5e-08 62.0 90 38.9
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 9.7e-08 61.6 83 41.0
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.4e-06 57.0 138 34.8


User provided reference genes

Program Settings