Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 1.1e-142 510.0 270 100.0
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 4.9e-114 414.8 285 82.8
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 3.5e-112 408.7 285 77.9
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 1.1e-81 307.4 196 88.8
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 1.0e-79 300.8 281 59.8
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 3.0e-79 299.3 284 59.2
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 2.0e-75 286.6 287 58.5
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 4.4e-70 268.9 291 54.3
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 1.7e-66 256.9 230 62.2
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 3.8e-66 255.8 277 55.6
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 9.4e-65 251.1 232 61.6
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 9.4e-65 251.1 246 56.5
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 9.4e-65 251.1 288 55.2
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.6e-64 250.4 232 61.2
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.6e-64 250.4 288 52.8
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 4.7e-64 248.8 231 60.2
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 5.2e-63 245.4 231 59.3
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.5e-62 243.8 284 53.5
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 7.4e-62 241.5 293 49.1
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 9.7e-62 241.1 253 57.3
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 2.8e-61 239.6 284 54.2
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 2.8e-61 239.6 289 53.3
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 3.7e-61 239.2 287 50.5
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 4.8e-61 238.8 290 52.8
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 6.3e-61 238.4 284 54.2
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 8.2e-61 238.0 233 54.1
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 8.2e-61 238.0 300 53.0
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 2.4e-60 236.5 293 52.6
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 4.1e-60 235.7 289 54.0
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 4.1e-60 235.7 236 59.3
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 5.3e-60 235.3 284 51.8
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 1.2e-59 234.2 289 53.6
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.6e-59 233.8 282 47.9
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 2.6e-59 233.0 282 47.5
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.6e-59 233.0 261 49.8
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 4.5e-59 232.3 234 58.5
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.3e-58 230.7 231 55.0
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 2.2e-58 229.9 284 52.8
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 2.9e-58 229.6 283 51.6
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 3.8e-58 229.2 228 57.5
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 3.8e-58 229.2 232 53.9
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 5.0e-58 228.8 291 48.1
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 6.5e-58 228.4 296 51.7
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 6.5e-58 228.4 233 54.9
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 8.5e-58 228.0 295 47.8
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 1.1e-57 227.6 233 54.1
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-57 227.6 284 53.9
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.9e-57 226.9 285 49.5
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 2.5e-57 226.5 228 53.9
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 4.2e-57 225.7 229 52.8
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 4.2e-57 225.7 231 53.2
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 5.5e-57 225.3 233 54.1
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 7.2e-57 224.9 236 54.2
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 9.4e-57 224.6 232 53.4
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 1.2e-56 224.2 231 52.8
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.6e-56 223.8 260 53.8
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 1.6e-56 223.8 287 52.6
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.6e-56 223.8 232 56.5
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.1e-56 223.4 282 51.1
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 2.7e-56 223.0 227 53.3
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 2.7e-56 223.0 231 52.4
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 3.6e-56 222.6 236 53.0
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 3.6e-56 222.6 236 53.0
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 6.1e-56 221.9 231 52.8
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 8.0e-56 221.5 283 46.6
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 8.0e-56 221.5 233 57.5
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 1.0e-55 221.1 282 47.9
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 1.0e-55 221.1 231 55.0
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.4e-55 220.7 233 57.5
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 2.3e-55 219.9 233 53.2
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 2.3e-55 219.9 276 47.8
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 2.3e-55 219.9 231 51.9
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 3.0e-55 219.5 250 51.2
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 3.0e-55 219.5 228 53.9
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 4.0e-55 219.2 227 52.4
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 4.0e-55 219.2 234 52.6
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 6.8e-55 218.4 232 53.4
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 8.8e-55 218.0 224 53.1
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 8.8e-55 218.0 282 51.1
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 1.2e-54 217.6 226 52.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-54 217.6 228 57.0
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.5e-54 217.2 231 56.3
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 2.6e-54 216.5 233 57.1
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 2.6e-54 216.5 235 53.2
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 3.4e-54 216.1 236 50.8
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.4e-54 215.7 255 53.3
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.7e-54 215.3 228 57.5
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 9.8e-54 214.5 240 51.2
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 1.3e-53 214.2 231 51.5
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 1.7e-53 213.8 231 51.1
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 3.7e-53 212.6 231 50.6
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 4.8e-53 212.2 231 56.3
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.1e-52 211.1 233 52.8
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 2.4e-52 209.9 233 50.2
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 4.1e-52 209.1 227 56.8
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 7.7e-51 204.9 195 54.9
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 1.0e-50 204.5 236 49.2
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 3.8e-50 202.6 223 56.5
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.8e-50 202.6 228 55.7
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 5.0e-50 202.2 195 53.3
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 8.5e-50 201.4 281 45.9
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 8.5e-50 201.4 217 53.5
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 2.5e-49 199.9 291 43.6
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 4.2e-49 199.1 235 52.3
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 9.4e-49 198.0 293 43.0
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 3.6e-48 196.1 241 48.1
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 1.8e-44 183.7 144 63.2
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 1.3e-42 177.6 235 47.7
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 4.4e-38 162.5 122 60.7
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 7.0e-36 155.2 232 47.0
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 2.0e-35 153.7 246 43.1
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.7e-35 153.3 190 47.4
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 4.9e-29 132.5 187 50.3
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 9.8e-22 108.2 110 50.9
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 1.7e-21 107.5 173 38.7
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 6.0e-11 72.4 68 52.9
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 6.0e-11 72.4 38 78.9
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 2.3e-10 70.5 68 51.5
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 8.6e-10 68.6 68 51.5
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 3.6e-08 63.2 121 36.4
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.4e-07 60.5 227 30.0
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 5.2e-07 59.3 72 45.8
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 7.6e-06 55.5 68 44.1


User provided reference genes

Program Settings