Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 4.1e-120 434.9 240 100.0
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 1.2e-119 433.3 238 100.0
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 1.2e-114 416.8 240 90.8
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 3.3e-85 318.9 240 70.8
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 4.7e-84 315.1 240 68.3
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 8.0e-84 314.3 240 68.3
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 2.0e-82 309.7 240 70.0
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 5.8e-82 308.1 196 88.8
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 3.2e-80 302.4 240 67.1
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 5.4e-80 301.6 240 67.1
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 9.2e-80 300.8 240 64.2
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 1.2e-79 300.4 240 64.2
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 2.7e-79 299.3 240 66.2
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 3.5e-79 298.9 240 65.4
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.7e-78 296.6 239 66.1
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 5.0e-78 295.0 240 65.0
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 3.3e-77 292.4 238 69.3
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 4.3e-77 292.0 238 68.5
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.2e-76 290.4 238 64.3
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 1.6e-76 290.0 243 65.4
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 8.1e-76 287.7 237 62.0
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 1.4e-75 287.0 240 67.1
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 4.0e-75 285.4 238 62.2
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 5.2e-75 285.0 240 66.7
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 8.9e-75 284.3 239 63.2
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 8.9e-75 284.3 238 66.0
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 1.2e-74 283.9 240 62.5
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.5e-74 283.5 238 62.6
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 2.0e-74 283.1 238 62.2
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 2.0e-74 283.1 238 62.2
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 2.6e-74 282.7 239 62.8
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 3.4e-74 282.3 239 61.5
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 3.4e-74 282.3 238 65.1
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 9.8e-74 280.8 237 65.8
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 9.8e-74 280.8 240 61.2
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 9.8e-74 280.8 240 62.1
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 9.8e-74 280.8 238 64.7
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 2.9e-73 279.3 239 61.5
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 2.9e-73 279.3 238 64.7
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.9e-73 279.3 238 65.1
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 4.9e-73 278.5 241 60.6
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 6.4e-73 278.1 238 60.5
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 1.1e-72 277.3 238 60.9
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.9e-72 276.6 238 64.3
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 1.9e-72 276.6 237 63.7
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.2e-72 275.8 238 60.9
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 4.1e-72 275.4 237 64.6
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 5.4e-72 275.0 238 60.5
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 5.4e-72 275.0 238 64.3
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 1.6e-71 273.5 240 60.8
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 2.1e-71 273.1 238 61.8
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 2.7e-71 272.7 241 60.6
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.7e-71 272.7 238 64.3
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 3.5e-71 272.3 237 59.9
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 6.0e-71 271.6 238 60.5
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.0e-70 270.8 241 59.8
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 1.0e-70 270.8 238 59.7
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.0e-70 270.8 237 62.9
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 1.3e-70 270.4 238 59.7
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 1.7e-70 270.0 240 58.8
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 3.0e-70 269.2 238 62.6
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 3.9e-70 268.9 238 60.1
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 5.1e-70 268.5 240 58.8
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 5.1e-70 268.5 244 62.7
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 5.1e-70 268.5 244 62.7
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 6.6e-70 268.1 243 58.8
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 6.6e-70 268.1 243 58.8
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 6.6e-70 268.1 238 63.9
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 8.6e-70 267.7 234 60.3
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 8.6e-70 267.7 238 58.8
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 8.6e-70 267.7 240 59.6
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.1e-69 267.3 244 62.7
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.5e-69 266.9 238 60.9
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.5e-69 266.9 240 58.3
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.5e-69 266.2 238 63.9
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 4.3e-69 265.4 240 57.5
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 4.3e-69 265.4 238 59.2
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 5.6e-69 265.0 244 58.2
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 7.3e-69 264.6 240 57.1
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 7.3e-69 264.6 244 62.3
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 9.5e-69 264.2 238 63.4
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 2.8e-68 262.7 236 61.9
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 2.8e-68 262.7 238 63.4
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 2.8e-68 262.7 240 58.8
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 3.6e-68 262.3 238 62.2
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 3.6e-68 262.3 237 64.1
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.1e-67 260.8 237 62.4
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.1e-67 260.8 237 62.4
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 2.3e-67 259.6 215 60.9
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 3.1e-67 259.2 244 60.7
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 6.8e-67 258.1 215 60.9
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 8.9e-67 257.7 238 58.8
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.5e-66 256.9 238 58.0
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.9e-65 252.7 238 58.0
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 2.9e-65 252.7 217 59.0
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.8e-65 252.3 217 60.4
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.8e-65 252.3 237 60.8
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 2.4e-64 249.6 234 61.1
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 1.2e-63 247.3 217 59.9
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 2.8e-60 236.1 238 53.4
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 4.7e-60 235.3 241 53.1
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 8.1e-60 234.6 243 52.7
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 4.9e-57 225.3 237 53.6
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.6e-55 220.3 164 62.8
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 1.0e-54 217.6 187 61.0
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 4.8e-52 208.8 240 55.0
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.5e-50 203.8 184 59.8
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 5.8e-50 201.8 185 60.0
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 7.6e-50 201.4 188 62.2
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 6.0e-47 191.8 161 61.5
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 3.3e-45 186.0 248 47.2
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 1.9e-40 170.2 154 56.5
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 1.6e-39 167.2 183 50.3
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 4.8e-28 129.0 149 54.4
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 3.2e-24 116.3 81 65.4
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.0e-22 111.3 239 37.7
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 7.9e-15 85.1 153 37.3
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 3.1e-11 73.2 96 42.7
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 5.3e-11 72.4 96 42.7
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 4.5e-10 69.3 96 41.7
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 4.7e-07 59.3 68 45.6
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 1.8e-06 57.4 72 44.4


User provided reference genes

Program Settings