Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 7.4e-159 563.9 305 100.0
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 8.8e-152 540.4 301 92.7
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 4.0e-120 435.3 238 100.0
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 1.9e-114 416.4 285 82.8
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 2.6e-95 352.8 318 60.7
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 3.2e-93 345.9 322 60.2
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 2.7e-92 342.8 320 61.2
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 7.6e-87 324.7 251 68.9
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 2.1e-84 316.6 325 56.6
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 4.6e-84 315.5 247 66.4
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 7.8e-84 314.7 247 66.4
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.3e-83 313.9 247 63.6
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 1.7e-83 313.5 247 63.6
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 2.3e-83 313.2 262 62.6
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 3.9e-83 312.4 247 65.6
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 6.6e-83 311.6 249 65.5
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 4.3e-82 308.9 291 61.9
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 2.1e-81 306.6 320 55.9
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 4.0e-80 302.4 275 62.5
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 8.9e-80 301.2 298 56.0
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.5e-79 300.4 326 54.3
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 2.0e-79 300.1 256 64.5
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 7.6e-79 298.1 325 55.1
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 3.8e-78 295.8 306 54.9
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 8.4e-78 294.7 297 54.2
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 8.4e-78 294.7 257 63.0
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.1e-77 294.3 258 60.5
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 4.2e-77 292.4 257 58.8
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 4.2e-77 292.4 251 63.3
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 7.1e-77 291.6 279 55.6
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 7.1e-77 291.6 331 52.0
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 9.3e-77 291.2 248 60.5
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 9.3e-77 291.2 248 60.5
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 1.2e-76 290.8 331 51.7
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 2.1e-76 290.0 258 59.3
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 2.1e-76 290.0 259 58.3
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 7.8e-76 288.1 252 59.9
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 7.8e-76 288.1 247 63.6
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.0e-75 287.7 257 62.3
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.7e-75 287.0 248 58.9
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 3.9e-75 285.8 257 58.0
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 3.9e-75 285.8 247 59.5
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 5.1e-75 285.4 247 63.6
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 6.6e-75 285.0 247 59.9
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 8.7e-75 284.6 257 58.4
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 8.7e-75 284.6 257 61.5
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 8.7e-75 284.6 253 62.5
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 1.5e-74 283.9 328 50.6
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 1.5e-74 283.9 297 57.2
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.5e-74 283.9 326 52.5
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 1.5e-74 283.9 248 62.9
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 2.5e-74 283.1 315 54.3
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 3.3e-74 282.7 260 58.1
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 3.3e-74 282.7 257 57.6
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 4.3e-74 282.3 248 58.1
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 4.3e-74 282.3 257 60.3
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 5.6e-74 282.0 248 59.3
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 7.3e-74 281.6 248 60.1
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 9.6e-74 281.2 238 60.9
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 9.6e-74 281.2 257 57.6
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 1.3e-73 280.8 248 58.1
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 1.3e-73 280.8 263 56.3
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 2.1e-73 280.0 248 58.5
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.1e-73 280.0 257 61.5
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 3.6e-73 279.3 248 61.3
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 4.8e-73 278.9 257 57.6
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 8.1e-73 278.1 330 52.4
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 8.1e-73 278.1 263 60.1
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.1e-72 277.7 330 52.4
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.1e-72 277.7 260 56.2
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.4e-72 277.3 300 54.3
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.4e-72 277.3 250 57.6
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.4e-72 277.3 250 57.6
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 1.8e-72 276.9 253 56.9
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 2.4e-72 276.6 248 57.3
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 4.0e-72 275.8 293 51.2
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 5.3e-72 275.4 264 54.9
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 6.9e-72 275.0 248 58.1
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 2.0e-71 273.5 328 52.7
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 1.7e-70 270.4 257 60.7
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 2.2e-70 270.0 336 52.1
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 2.9e-70 269.6 255 56.5
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 3.8e-70 269.2 245 60.4
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 3.8e-70 269.2 254 60.6
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.1e-69 267.7 247 57.9
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 1.4e-69 267.3 257 58.8
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.4e-69 267.3 257 55.6
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 4.2e-69 265.8 257 58.8
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.2e-69 265.8 257 58.8
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 7.1e-69 265.0 238 56.7
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 2.1e-68 263.5 248 61.3
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.5e-68 262.7 238 58.0
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 7.9e-68 261.5 257 55.3
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.0e-67 259.6 257 57.6
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 8.7e-67 258.1 238 57.6
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 9.6e-66 254.6 276 50.4
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.3e-65 254.2 322 46.6
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 3.7e-65 252.7 259 52.1
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 2.4e-64 250.0 332 44.9
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 3.1e-64 249.6 334 44.9
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 4.0e-64 249.2 232 60.8
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.7e-62 243.8 257 51.0
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 4.6e-60 235.7 248 52.8
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 8.2e-57 224.9 258 53.1
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.5e-55 220.7 198 60.1
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 2.0e-55 220.3 210 56.7
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 3.4e-55 219.5 162 62.3
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 4.9e-54 215.7 205 57.6
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.3e-51 206.8 210 58.1
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.1e-48 198.0 290 44.5
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 7.6e-47 191.8 161 61.5
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.4e-40 170.2 191 49.2
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 3.1e-40 169.9 152 55.9
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 5.3e-32 142.5 171 52.0
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.7e-25 119.8 257 35.8
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 1.1e-24 118.2 83 63.9
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 5.7e-18 95.9 175 36.6
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 4.0e-11 73.2 96 42.7
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 6.8e-11 72.4 96 42.7
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 5.7e-10 69.3 96 41.7
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 1.8e-08 64.3 96 44.8
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 5.9e-07 59.3 68 45.6
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 2.3e-06 57.4 72 44.4


User provided reference genes

Program Settings