Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 1.0e-168 596.7 307 100.0
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 2.0e-151 539.3 301 92.7
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 8.6e-115 417.5 240 90.8
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 1.8e-112 409.8 285 77.9
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 6.6e-99 364.8 320 61.2
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 1.6e-97 360.1 324 61.1
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 3.1e-96 355.9 322 61.8
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 9.6e-90 334.3 253 68.4
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 3.1e-88 329.3 327 57.2
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.3e-86 323.9 249 63.5
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 1.7e-86 323.6 249 63.5
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 7.1e-85 318.2 249 63.5
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 6.0e-84 315.1 249 62.2
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 1.3e-83 313.9 264 60.6
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.8e-83 313.5 300 56.7
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 8.7e-83 311.2 281 57.3
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 1.1e-82 310.8 249 61.8
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 2.5e-82 309.7 248 61.3
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 7.4e-82 308.1 293 58.7
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 9.6e-82 307.8 308 55.8
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 9.6e-82 307.8 322 53.4
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 1.3e-81 307.4 333 52.9
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.6e-81 307.0 333 52.9
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 3.7e-81 305.8 261 59.8
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 1.1e-80 304.3 317 54.6
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.1e-80 304.3 317 54.6
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.8e-80 303.5 260 61.2
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 3.1e-80 302.8 249 61.8
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 3.1e-80 302.8 277 59.9
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 5.3e-80 302.0 299 54.2
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 5.3e-80 302.0 259 59.1
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 1.5e-79 300.4 262 58.8
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.5e-79 300.4 260 60.0
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 2.0e-79 300.1 254 61.0
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 3.4e-79 299.3 250 60.4
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 4.5e-79 298.9 259 60.6
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 5.8e-79 298.5 259 59.1
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 7.6e-79 298.1 330 51.8
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 7.6e-79 298.1 250 59.2
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 7.6e-79 298.1 249 60.6
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 1.0e-78 297.7 259 58.3
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 1.0e-78 297.7 240 62.5
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.3e-78 297.4 328 51.5
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 1.3e-78 297.4 259 58.3
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 4.9e-78 295.4 259 58.7
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.1e-77 294.3 327 52.0
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 1.1e-77 294.3 250 60.8
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 1.4e-77 293.9 250 61.2
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 1.4e-77 293.9 265 57.4
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 5.5e-77 292.0 308 52.6
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 5.5e-77 292.0 250 58.8
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 1.2e-76 290.8 250 59.2
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.2e-76 290.8 259 59.5
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.6e-76 290.4 302 55.3
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.6e-76 290.4 310 51.9
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 1.6e-76 290.4 253 60.1
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 2.1e-76 290.0 252 58.7
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 2.1e-76 290.0 252 58.7
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 3.5e-76 289.3 250 58.4
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 4.6e-76 288.9 259 58.7
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 6.0e-76 288.5 295 52.5
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 7.9e-76 288.1 266 56.0
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 5.1e-75 285.4 256 57.8
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.1e-74 284.3 249 59.8
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 1.9e-74 283.5 316 51.9
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 5.7e-74 282.0 259 57.5
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 7.4e-74 281.6 328 50.0
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 7.4e-74 281.6 249 59.8
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 9.6e-74 281.2 250 58.8
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.3e-73 280.8 259 57.9
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 1.3e-73 280.8 299 54.8
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.3e-73 280.8 255 59.2
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.6e-73 280.4 259 57.5
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 2.8e-73 279.6 316 51.3
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 2.8e-73 279.6 249 58.6
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 3.7e-73 279.3 259 56.8
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 8.2e-73 278.1 240 57.9
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 1.8e-72 276.9 238 58.4
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 3.1e-72 276.2 332 50.6
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 4.1e-72 275.8 332 50.6
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 4.1e-72 275.8 265 57.7
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 5.3e-72 275.4 249 57.4
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.5e-71 273.9 259 57.1
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 4.5e-71 272.3 238 58.0
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 7.6e-71 271.6 330 50.9
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 5.0e-70 268.9 250 55.6
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 6.5e-70 268.5 316 48.4
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.1e-69 267.7 317 48.3
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 1.4e-69 267.3 312 49.0
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.5e-69 266.5 256 57.8
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 3.2e-69 266.2 338 49.4
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 3.2e-69 266.2 259 56.8
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 2.7e-68 263.1 259 55.2
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 7.9e-68 261.5 334 45.5
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.0e-67 261.2 259 54.8
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.0e-67 261.2 259 54.8
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 1.0e-67 261.2 336 45.5
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.3e-67 260.8 259 54.8
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 1.5e-66 257.3 250 55.6
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 7.4e-66 255.0 259 53.7
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 3.7e-65 252.7 259 51.4
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 2.0e-63 246.9 234 56.8
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 7.7e-63 245.0 249 53.4
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 4.6e-60 235.7 269 51.3
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 6.1e-60 235.3 198 61.6
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 9.7e-58 228.0 205 58.5
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 6.3e-57 225.3 172 59.9
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 1.7e-54 217.2 260 47.7
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 6.7e-51 205.3 161 63.4
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.0e-50 203.8 210 53.3
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.5e-45 187.6 290 39.7
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 3.6e-44 183.0 191 50.8
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 1.6e-39 167.5 154 54.5
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 1.4e-32 144.4 171 49.7
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.0e-22 111.7 259 31.7
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 5.0e-22 109.4 81 59.3
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 6.8e-19 99.0 175 36.6
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 1.5e-13 81.3 96 46.9
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 2.5e-13 80.5 96 46.9
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 4.3e-13 79.7 96 51.0
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 2.1e-12 77.4 96 45.8
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 7.8e-07 58.9 68 45.6
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 2.3e-06 57.4 72 44.4


User provided reference genes

Program Settings