Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03241 Striga asiatica HOM05D000066 ORTHO05D403046 5.4e-181 637.5 312 100.0
SGA_v2.0_scaffold6G03228 Striga asiatica HOM05D000066 ORTHO05D000055 5.5e-16 89.4 53 83.0
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 3.9e-14 83.2 62 74.2
TAR365G0393 Trochodendron aralioides HOM05D000066 ORTHO05D000055 1.6e-12 77.8 74 58.1
Dinv12668 Davidia involucrata HOM05D000066 ORTHO05D000055 2.2e-12 77.4 50 74.0
Migut.N00624 Erythranthe guttata HOM05D000066 ORTHO05D000055 1.4e-11 74.7 53 71.7
SalBow3G1875 Salvia bowleyana HOM05D000066 ORTHO05D000055 1.4e-11 74.7 51 72.5
MSTRG.12778 Avicennia marina HOM05D000066 ORTHO05D000055 2.4e-11 73.9 60 66.7
Sabra02G0185800 Salix brachista HOM05D000066 ORTHO05D000055 3.1e-11 73.6 50 70.0
Actinidia30065 Actinidia chinensis HOM05D000066 ORTHO05D000055 4.1e-11 73.2 50 70.0
Cfa002584 Carpinus fangiana HOM05D000066 ORTHO05D000055 4.1e-11 73.2 50 70.0
Duzib138G1149 Durio zibethinus HOM05D000066 ORTHO05D000055 5.3e-11 72.8 50 72.0
Duzib138G0362 Durio zibethinus HOM05D000066 ORTHO05D000055 6.9e-11 72.4 50 72.0
Nitab4.5_0002616g0010 Nicotiana tabacum HOM05D000066 ORTHO05D013818 9.0e-11 72.0 49 69.4
Thecc.01G223100 Theobroma cacao HOM05D000066 ORTHO05D000055 9.0e-11 72.0 49 75.5
MBI15_g34992_MAGBIO Magnolia biondii HOM05D000066 ORTHO05D000055 1.2e-10 71.6 50 66.0
Phvul.008G129100 Phaseolus vulgaris HOM05D000066 ORTHO05D000055 1.5e-10 71.2 51 68.6
Ciclev10023425m.g Citrus clementina HOM05D000066 ORTHO05D000055 2.0e-10 70.9 141 36.9
Lj3g0021150 Lotus japonicus HOM05D000066 ORTHO05D000055 2.6e-10 70.5 66 48.5
Nitab4.5_0002641g0150 Nicotiana tabacum HOM05D000066 ORTHO05D000055 3.4e-10 70.1 63 57.1
BcaC01g04065 Brassica carinata HOM05D000066 ORTHO05D000055 4.5e-10 69.7 60 65.0
BolC3t16810H Brassica oleracea HOM05D000066 ORTHO05D000055 4.5e-10 69.7 60 65.0
VMungo1383G1363 Vigna mungo HOM05D000066 ORTHO05D000055 4.5e-10 69.7 53 56.6
A03p37420 Brassica napus HOM05D000066 ORTHO05D000055 5.9e-10 69.3 60 65.0
BraA03t12903Z Brassica rapa HOM05D000066 ORTHO05D000055 5.9e-10 69.3 60 65.0
Gohir.D08G212642 Gossypium hirsutum HOM05D000066 ORTHO05D000055 5.9e-10 69.3 50 66.0
Gorai.004G226400 Gossypium raimondii HOM05D000066 ORTHO05D000055 5.9e-10 69.3 50 66.0
CiPaw.03G147800 Carya illinoinensis HOM05D000066 ORTHO05D000055 7.6e-10 68.9 50 64.0
C03p45430 Brassica napus HOM05D000066 ORTHO05D000055 1.0e-09 68.6 60 65.0
Cpa.g.sc8.136 Carica papaya HOM05D000066 ORTHO05D000055 1.0e-09 68.6 56 57.1
Haze_24820 Corylus avellana HOM05D000066 ORTHO05D000055 1.0e-09 68.6 53 64.2
Cc01_g16870 Coffea canephora HOM05D000066 ORTHO05D000055 1.3e-09 68.2 77 49.4
Gohir.A08G195175 Gossypium hirsutum HOM05D000066 ORTHO05D000055 1.3e-09 68.2 50 64.0
Lj3g0021766 Lotus japonicus HOM05D000066 ORTHO05D000055 1.3e-09 68.2 53 58.5
Potri.002G244200 Populus trichocarpa HOM05D000066 ORTHO05D000055 1.3e-09 68.2 50 64.0
VMungo1383G1703 Vigna mungo HOM05D000066 ORTHO05D000055 1.3e-09 68.2 51 66.7
GSVIVG01003280001 Vitis vinifera HOM05D000066 ORTHO05D000055 1.3e-09 68.2 50 68.0
Cfa018788 Carpinus fangiana HOM05D000066 ORTHO05D000055 1.7e-09 67.8 67 56.7
Haze_07146 Corylus avellana HOM05D000066 ORTHO05D000055 1.7e-09 67.8 67 56.7
Glyma.08G350000 Glycine max HOM05D000066 ORTHO05D000055 1.7e-09 67.8 50 58.0
Phvul.008G129900 Phaseolus vulgaris HOM05D000066 ORTHO05D000055 1.7e-09 67.8 50 62.0
Thecc.01G223200 Theobroma cacao HOM05D000066 ORTHO05D000055 1.7e-09 67.8 67 52.2
Glyma.18G165700 Glycine max HOM05D000066 ORTHO05D000055 2.2e-09 67.4 51 66.7
Medtr7g056090 Medicago truncatula HOM05D000066 ORTHO05D000055 2.2e-09 67.4 71 53.5
Peaxi162Scf00372g01312 Petunia axillaris HOM05D000066 ORTHO05D000055 2.2e-09 67.4 49 63.3
Dinv38219 Davidia involucrata HOM05D000066 ORTHO05D000055 2.9e-09 67.0 48 66.7
Lsat_1_v5_gn_9_12461 Lactuca sativa HOM05D000066 ORTHO05D000055 2.9e-09 67.0 50 62.0
Lj4A793T54 Lonicera japonica HOM05D000066 ORTHO05D000055 2.9e-09 67.0 95 42.1
Oeu023252.1 Olea europaea HOM05D000066 ORTHO05D000055 2.9e-09 67.0 65 52.3
DCAR_004729 Daucus carota HOM05D000066 ORTHO05D000055 3.8e-09 66.6 51 64.7
FvH4_2g18761 Fragaria vesca HOM05D000066 ORTHO05D000055 3.8e-09 66.6 64 56.2
FAN24G2180 Fragaria x ananassa HOM05D000066 ORTHO05D000055 3.8e-09 66.6 64 56.2
Lj3g0018081 Lotus japonicus HOM05D000066 ORTHO05D000055 3.8e-09 66.6 50 60.0
Os06g0237400 Oryza sativa ssp. japonica HOM05D000066 ORTHO05D000055 3.8e-09 66.6 62 56.5
Prupe.8G201000 Prunus persica HOM05D000066 ORTHO05D000055 3.8e-09 66.6 51 64.7
Oeu023251.1 Olea europaea HOM05D000066 ORTHO05D000055 5.0e-09 66.2 65 52.3
PSO063G1251 Papaver somniferum HOM05D000066 ORTHO05D000055 5.0e-09 66.2 50 62.0
TPR.G17132 Trifolium pratense HOM05D000066 ORTHO05D000055 5.0e-09 66.2 50 60.0
AL9U11084 Arabidopsis lyrata HOM05D000066 ORTHO05D000055 6.5e-09 65.9 50 66.0
Eucgr.H00787 Eucalyptus grandis HOM05D000066 ORTHO05D000055 6.5e-09 65.9 53 58.5
CSS0006276 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D000055 1.1e-08 65.1 52 59.6
CSS0008201 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D000055 1.1e-08 65.1 52 59.6
CSS0045590 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D000055 1.1e-08 65.1 52 59.6
Manes.13G046500 Manihot esculenta HOM05D000066 ORTHO05D000055 1.1e-08 65.1 50 60.0
AT4G13090 Arabidopsis thaliana HOM05D000066 ORTHO05D000055 1.4e-08 64.7 50 66.0
QL09p053047 Quercus lobata HOM05D000066 ORTHO05D000055 1.4e-08 64.7 48 64.6
Hma1.2p1_0187F.1_g082330 Hydrangea macrophylla HOM05D000066 ORTHO05D000055 1.9e-08 64.3 72 50.0
Aa31LG9G4890 Aethionema arabicum HOM05D000066 ORTHO05D000055 2.5e-08 63.9 50 64.0
arahy.Tifrunner.gnm1.ann1.JZ1BNU Arachis hypogaea HOM05D000066 ORTHO05D000055 2.5e-08 63.9 50 60.0
C03p45420 Brassica napus HOM05D000066 ORTHO05D000055 2.5e-08 63.9 50 66.0
BolC3t16809H Brassica oleracea HOM05D000066 ORTHO05D000055 2.5e-08 63.9 50 66.0
CARHR218520 Cardamine hirsuta HOM05D000066 ORTHO05D000055 2.5e-08 63.9 56 60.7
COL.COLO4_15656 Corchorus olitorius HOM05D000066 ORTHO05D000055 2.5e-08 63.9 39 74.4
Gorai.007G155700 Gossypium raimondii HOM05D000066 ORTHO05D000055 2.5e-08 63.9 67 52.2
Medtr8g013055 Medicago truncatula HOM05D000066 ORTHO05D000055 2.5e-08 63.9 50 60.0
vmacro02771 Vaccinium macrocarpon HOM05D000066 ORTHO05D000055 2.5e-08 63.9 50 62.0
AL9U11190 Arabidopsis lyrata HOM05D000066 ORTHO05D000055 3.2e-08 63.5 50 64.0
Gohir.D11G145250 Gossypium hirsutum HOM05D000066 ORTHO05D000055 3.2e-08 63.5 67 52.2
HanXRQChr10g0279411 Helianthus annuus HOM05D000066 ORTHO05D000055 3.2e-08 63.5 53 60.4
CARHR218500 Cardamine hirsuta HOM05D000066 ORTHO05D000055 4.2e-08 63.2 102 39.2
Dinv11664 Davidia involucrata HOM05D000066 ORTHO05D000055 4.2e-08 63.2 68 47.1
ECA247G0835 Erigeron canadensis HOM05D000066 ORTHO05D000055 4.2e-08 63.2 51 58.8
Lalb_Chr03g0041591 Lupinus albus HOM05D000066 ORTHO05D000055 4.2e-08 63.2 49 57.1
TAR636G0196 Trochodendron aralioides HOM05D000066 ORTHO05D000055 4.2e-08 63.2 50 62.0
Carub.0007s2966 Capsella rubella HOM05D000066 ORTHO05D000055 5.5e-08 62.8 50 60.0
Hma1.2p1_0978F.1_g243360 Hydrangea macrophylla HOM05D000066 ORTHO05D013818 5.5e-08 62.8 91 44.0
Duzib138G0018 Durio zibethinus HOM05D000066 ORTHO05D000055 7.2e-08 62.4 53 56.6
Duzib138G1490 Durio zibethinus HOM05D000066 ORTHO05D000055 7.2e-08 62.4 53 56.6
Migut.A00419 Erythranthe guttata HOM05D000066 ORTHO05D000055 7.2e-08 62.4 60 53.3
Migut.A00425 Erythranthe guttata HOM05D000066 ORTHO05D000055 7.2e-08 62.4 60 53.3
Nn1g07914 Nelumbo nucifera HOM05D000066 ORTHO05D000055 9.3e-08 62.0 61 52.5
CANSAT01G2242 Cannabis sativa HOM05D000066 ORTHO05D000055 1.2e-07 61.6 66 50.0
CANSAT01G3101 Cannabis sativa HOM05D000066 ORTHO05D000055 1.2e-07 61.6 66 50.0
Dinv11665 Davidia involucrata HOM05D000066 ORTHO05D000055 1.6e-07 61.2 68 44.1
Migut.A01019 Erythranthe guttata HOM05D000066 ORTHO05D000055 1.6e-07 61.2 54 55.6
Oeu023250.1 Olea europaea HOM05D000066 ORTHO05D000055 1.6e-07 61.2 65 49.2
Gohir.A11G139000 Gossypium hirsutum HOM05D000066 ORTHO05D000055 2.1e-07 60.8 67 49.3
Thhalv10026812m.g Eutrema salsugineum HOM05D000066 ORTHO05D000055 2.7e-07 60.5 49 65.3
Ciclev10033360m.g Citrus clementina HOM05D000066 ORTHO05D000055 3.6e-07 60.1 50 52.0
AL9U11120 Arabidopsis lyrata HOM05D000066 ORTHO05D000055 4.6e-07 59.7 50 58.0
AT4G13080 Arabidopsis thaliana HOM05D000066 ORTHO05D000055 4.6e-07 59.7 50 60.0
Cc10_g08620 Coffea canephora HOM05D000066 ORTHO05D000055 4.6e-07 59.7 53 52.8
Nitab4.5_0000045g0330 Nicotiana tabacum HOM05D000066 ORTHO05D000055 4.6e-07 59.7 53 54.7
CSS0043136 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D000055 6.1e-07 59.3 55 56.4
MD05G1173600 Malus domestica HOM05D000066 ORTHO05D000055 6.1e-07 59.3 64 45.3
Nitab4.5_0003502g0060 Nicotiana tabacum HOM05D000066 ORTHO05D000055 6.1e-07 59.3 53 58.5
Sp3g22650 Schrenkiella parvula HOM05D000066 ORTHO05D000055 6.1e-07 59.3 59 52.5
SpUn0027_0130 Schrenkiella parvula HOM05D000066 ORTHO05D000055 6.1e-07 59.3 59 52.5
Solyc06g083400.3 Solanum lycopersicum HOM05D000066 ORTHO05D000055 6.1e-07 59.3 67 43.3
TWI23G0472 Tripterygium wilfordii HOM05D000066 ORTHO05D000055 6.1e-07 59.3 50 56.0
GSVIVG01004746001 Vitis vinifera HOM05D000066 ORTHO05D000055 6.1e-07 59.3 50 56.0
Zm00001eb371910 Zea mays HOM05D000066 ORTHO05D000055 6.1e-07 59.3 73 46.6
BcaB04g18698 Brassica carinata HOM05D000066 ORTHO05D000055 7.9e-07 58.9 50 60.0
MD05G1173400 Malus domestica HOM05D000066 ORTHO05D000055 7.9e-07 58.9 51 58.8
Atru.chr6.1507 Acer truncatum HOM05D000066 ORTHO05D000055 1.3e-06 58.2 39 66.7
A03p37410 Brassica napus HOM05D000066 ORTHO05D000055 1.3e-06 58.2 50 64.0
BraA03t12902Z Brassica rapa HOM05D000066 ORTHO05D000055 1.3e-06 58.2 50 64.0
Eucgr.H00788 Eucalyptus grandis HOM05D000066 ORTHO05D000055 1.3e-06 58.2 58 50.0
TWI36G0857 Tripterygium wilfordii HOM05D000066 ORTHO05D000055 1.3e-06 58.2 35 71.4
Zm00001eb371920 Zea mays HOM05D000066 ORTHO05D000055 1.3e-06 58.2 79 45.6
BcaC06g35769 Brassica carinata HOM05D000066 ORTHO05D000055 1.8e-06 57.8 53 54.7
A07p07300 Brassica napus HOM05D000066 ORTHO05D001866 1.8e-06 57.8 53 54.7
C07p11080 Brassica napus HOM05D000066 ORTHO05D001866 1.8e-06 57.8 53 54.7
BraA07t28520Z Brassica rapa HOM05D000066 ORTHO05D001866 1.8e-06 57.8 53 54.7
Carub.0007s2965 Capsella rubella HOM05D000066 ORTHO05D000055 1.8e-06 57.8 50 58.0
MD05G1173300 Malus domestica HOM05D000066 ORTHO05D000055 1.8e-06 57.8 62 53.2
Nitab4.5_0003020g0020 Nicotiana tabacum HOM05D000066 ORTHO05D000055 1.8e-06 57.8 53 54.7
Carub.0005s1477 Capsella rubella HOM05D000066 ORTHO05D012942 2.3e-06 57.4 50 52.0
ClCG03G011190 Citrullus lanatus HOM05D000066 ORTHO05D000055 2.3e-06 57.4 61 49.2
Thhalv10002629m.g Eutrema salsugineum HOM05D000066 ORTHO05D000055 2.3e-06 57.4 50 58.0
AT3G48580 Arabidopsis thaliana HOM05D000066 ORTHO05D012942 3.0e-06 57.0 50 52.0
Dinv11666 Davidia involucrata HOM05D000066 ORTHO05D000055 3.0e-06 57.0 67 40.3
HanXRQChr07g0193441 Helianthus annuus HOM05D000066 ORTHO05D000055 3.0e-06 57.0 51 54.9
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 3.0e-06 57.0 68 47.1
SGA_v2.0_scaffold27G11683 Striga asiatica HOM05D000066 ORTHO05D000055 3.0e-06 57.0 65 44.6
Aa31LG8G12010 Aethionema arabicum HOM05D000066 ORTHO05D000055 3.9e-06 56.6 71 52.1
CSS0044532 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D000055 3.9e-06 56.6 55 54.5
Cc10_g08610 Coffea canephora HOM05D000066 ORTHO05D000055 3.9e-06 56.6 53 49.1
Nitab4.5_0008794g0010 Nicotiana tabacum HOM05D000066 ORTHO05D000055 3.9e-06 56.6 67 47.8
QL09p052182 Quercus lobata HOM05D000066 ORTHO05D000055 3.9e-06 56.6 36 69.4
QL10p002796 Quercus lobata HOM05D000066 ORTHO05D000055 3.9e-06 56.6 50 58.0
AL5G28030 Arabidopsis lyrata HOM05D000066 ORTHO05D012942 5.1e-06 56.2 50 52.0
MSTRG.12135 Avicennia marina HOM05D000066 ORTHO05D000055 5.1e-06 56.2 48 56.2
Glyma.08G350500 Glycine max HOM05D000066 ORTHO05D000055 5.1e-06 56.2 43 65.1
Nitab4.5_0000213g0100 Nicotiana tabacum HOM05D000066 ORTHO05D000055 5.1e-06 56.2 53 50.9
Nitab4.5_0001430g0010 Nicotiana tabacum HOM05D000066 ORTHO05D000055 5.1e-06 56.2 69 43.5
Oeu060206.2 Olea europaea HOM05D000066 ORTHO05D000055 5.1e-06 56.2 53 50.9
THA.LOC104808793 Tarenaya hassleriana HOM05D000066 ORTHO05D000055 5.1e-06 56.2 51 56.9
Carub.0007s2964 Capsella rubella HOM05D000066 ORTHO05D000055 6.7e-06 55.8 59 54.2
Oeu029085.1 Olea europaea HOM05D000066 ORTHO05D000055 6.7e-06 55.8 50 50.0
Peaxi162Scf00078g00747 Petunia axillaris HOM05D000066 ORTHO05D000055 6.7e-06 55.8 53 50.9
Thecc.03G130000 Theobroma cacao HOM05D000066 ORTHO05D000055 6.7e-06 55.8 64 43.8
TPR.G20446 Trifolium pratense HOM05D000066 ORTHO05D025781 6.7e-06 55.8 69 46.4
TPR.G7411 Trifolium pratense HOM05D000066 ORTHO05D025781 6.7e-06 55.8 77 45.5
AL9U11082 Arabidopsis lyrata HOM05D000066 ORTHO05D000055 8.7e-06 55.5 58 56.9
Nitab4.5_0002260g0220 Nicotiana tabacum HOM05D000066 ORTHO05D000055 8.7e-06 55.5 47 59.6
Oeu060202.1 Olea europaea HOM05D000066 ORTHO05D000055 8.7e-06 55.5 65 46.2
PGSC0003DMG400001229 Solanum tuberosum HOM05D000066 ORTHO05D000055 8.7e-06 55.5 49 59.2


User provided reference genes

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