Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03154 Striga asiatica HOM05D006211 ORTHO05D007202 2.3e-67 258.8 138 100.0
SGA_v2.0_scaffold20G09263 Striga asiatica HOM05D006211 ORTHO05D007202 8.8e-35 150.6 140 66.4
MSTRG.1998 Avicennia marina HOM05D006211 ORTHO05D007202 2.0e-18 96.3 163 45.4
Hma1.2p1_1594F.1_g292720 Hydrangea macrophylla HOM05D006211 ORTHO05D007202 3.9e-14 82.0 167 39.5
Dinv28989 Davidia involucrata HOM05D006211 ORTHO05D007202 5.6e-13 78.2 167 39.5
Oeu019228.1 Olea europaea HOM05D006211 ORTHO05D007202 5.6e-13 78.2 156 39.7
Oeu028870.1 Olea europaea HOM05D006211 ORTHO05D007202 5.6e-13 78.2 156 39.7
MSTRG.13745 Avicennia marina HOM05D006211 ORTHO05D007202 2.8e-12 75.9 97 51.5
Peaxi162Scf00170g00822 Petunia axillaris HOM05D006211 ORTHO05D007202 4.7e-12 75.1 163 36.2
Actinidia03352 Actinidia chinensis HOM05D006211 ORTHO05D007202 6.2e-12 74.7 163 39.3
Gohir.A08G154500 Gossypium hirsutum HOM05D006211 ORTHO05D007202 8.1e-12 74.3 162 36.4
Dinv25246 Davidia involucrata HOM05D006211 ORTHO05D007202 1.4e-11 73.6 167 36.5
Haze_08174 Corylus avellana HOM05D006211 ORTHO05D007202 1.8e-11 73.2 165 36.4
Lj8A306T66 Lonicera japonica HOM05D006211 ORTHO05D007202 1.8e-11 73.2 172 38.4
Migut.E00776 Erythranthe guttata HOM05D006211 ORTHO05D007202 2.3e-11 72.8 171 39.2
Sed0013517 Sechium edule HOM05D006211 ORTHO05D007202 2.3e-11 72.8 164 34.1
vmacro00294 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 2.3e-11 72.8 157 36.9
Gorai.004G183000 Gossypium raimondii HOM05D006211 ORTHO05D007202 3.1e-11 72.4 162 36.4
Thecc.03G308400 Theobroma cacao HOM05D006211 ORTHO05D007202 4.0e-11 72.0 163 35.6
Cpa.g.sc90.12 Carica papaya HOM05D006211 ORTHO05D007202 5.2e-11 71.6 168 36.3
Duzib084G0219 Durio zibethinus HOM05D006211 ORTHO05D007202 5.2e-11 71.6 162 34.6
Cfa012495 Carpinus fangiana HOM05D006211 ORTHO05D007202 8.9e-11 70.9 165 32.7
vmacro00301 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 1.5e-10 70.1 157 36.3
PGR042G2947 Punica granatum HOM05D006211 ORTHO05D007202 2.0e-10 69.7 168 32.7
BcaC02g11652 Brassica carinata HOM05D006211 ORTHO05D007202 2.6e-10 69.3 167 34.1
A05p10260 Brassica napus HOM05D006211 ORTHO05D007202 2.6e-10 69.3 163 33.1
BolC4t22919H Brassica oleracea HOM05D006211 ORTHO05D007202 2.6e-10 69.3 167 34.1
BraA05t19966Z Brassica rapa HOM05D006211 ORTHO05D007202 2.6e-10 69.3 163 33.1
CANSAT21G1179 Cannabis sativa HOM05D006211 ORTHO05D007202 2.6e-10 69.3 165 34.5
ClCG09G011720 Citrullus lanatus HOM05D006211 ORTHO05D007202 2.6e-10 69.3 164 34.8
Duzib205G0699 Durio zibethinus HOM05D006211 ORTHO05D007202 2.6e-10 69.3 166 35.5
Solyc08g076520.3 Solanum lycopersicum HOM05D006211 ORTHO05D007202 2.6e-10 69.3 174 33.9
Potri.001G138300 Populus trichocarpa HOM05D006211 ORTHO05D007202 4.4e-10 68.6 170 33.5
QL12p001245 Quercus lobata HOM05D006211 ORTHO05D007202 5.8e-10 68.2 161 32.9
Actinidia06373 Actinidia chinensis HOM05D006211 ORTHO05D007202 7.5e-10 67.8 104 45.2
Rhsim11G0019700 Rhododendron simsii HOM05D006211 ORTHO05D007202 7.5e-10 67.8 165 35.2
Sopen08g025100 Solanum pennellii HOM05D006211 ORTHO05D007202 7.5e-10 67.8 174 33.3
Gohir.D08G175100 Gossypium hirsutum HOM05D006211 ORTHO05D007202 9.8e-10 67.4 159 35.2
PGSC0003DMG400014798 Solanum tuberosum HOM05D006211 ORTHO05D007202 3.7e-09 65.5 173 33.5
COL.COLO4_16960 Corchorus olitorius HOM05D006211 ORTHO05D007202 4.9e-09 65.1 162 33.3
Sc22g0001800 Simmondsia chinensis HOM05D006211 ORTHO05D007202 4.9e-09 65.1 165 32.1
Atru.chr6.1617 Acer truncatum HOM05D006211 ORTHO05D007202 1.9e-08 63.2 164 34.8
CiPaw.11G097200 Carya illinoinensis HOM05D006211 ORTHO05D007202 3.2e-08 62.4 162 35.8
AUR62018657 Chenopodium quinoa HOM05D006211 ORTHO05D007202 3.2e-08 62.4 132 38.6
FvH4_5g22880 Fragaria vesca HOM05D006211 ORTHO05D007202 3.2e-08 62.4 166 32.5
FAN18G0589 Fragaria x ananassa HOM05D006211 ORTHO05D007202 3.2e-08 62.4 166 32.5
FAN18G2302 Fragaria x ananassa HOM05D006211 ORTHO05D007202 3.2e-08 62.4 166 32.5
Lsat_1_v5_gn_6_3501 Lactuca sativa HOM05D006211 ORTHO05D007202 4.1e-08 62.0 168 32.1
Potri.003G095500 Populus trichocarpa HOM05D006211 ORTHO05D007202 4.1e-08 62.0 173 31.2
BcaB02g09427 Brassica carinata HOM05D006211 ORTHO05D007202 7.1e-08 61.2 167 33.5
FAN08G1932 Fragaria x ananassa HOM05D006211 ORTHO05D007202 7.1e-08 61.2 164 34.1
Sabra03G0064400 Salix brachista HOM05D006211 ORTHO05D007202 7.1e-08 61.2 173 30.6
Manes.17G010400 Manihot esculenta HOM05D006211 ORTHO05D007202 1.2e-07 60.5 170 31.8
Glyma.01G015400 Glycine max HOM05D006211 ORTHO05D007202 1.6e-07 60.1 154 30.5
Prupe.5G029800 Prunus persica HOM05D006211 ORTHO05D007202 1.6e-07 60.1 178 33.1
RcHm_v2.0_Chr7g0211581 Rosa chinensis HOM05D006211 ORTHO05D007202 1.6e-07 60.1 175 33.1
Sabra01G0107000 Salix brachista HOM05D006211 ORTHO05D007202 1.6e-07 60.1 159 32.7
TWI60G1252 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 1.6e-07 60.1 164 32.9
TWI81G0656 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 1.6e-07 60.1 164 34.8
Thhalv10017330m.g Eutrema salsugineum HOM05D006211 ORTHO05D007202 2.1e-07 59.7 168 33.3
EL10Ac5g12029 Beta vulgaris HOM05D006211 ORTHO05D007202 3.5e-07 58.9 164 35.4
CiPaw.12G067200 Carya illinoinensis HOM05D006211 ORTHO05D007202 3.5e-07 58.9 163 34.4
Hund14362 Selenicereus undatus HOM05D006211 ORTHO05D007202 3.5e-07 58.9 161 35.4
Nn1g00185 Nelumbo nucifera HOM05D006211 ORTHO05D007202 6.0e-07 58.2 165 33.3
Gohir.A03G000042 Gossypium hirsutum HOM05D006211 ORTHO05D007202 7.8e-07 57.8 144 33.3
Ah.12g055390 Amaranthus hybridus HOM05D006211 ORTHO05D007202 1.0e-06 57.4 166 32.5
FAN04G1558 Fragaria x ananassa HOM05D006211 ORTHO05D007202 1.0e-06 57.4 169 32.0
THA.LOC104814422 Tarenaya hassleriana HOM05D006211 ORTHO05D007202 1.0e-06 57.4 168 32.7
Lalb_Chr05g0215821 Lupinus albus HOM05D006211 ORTHO05D007202 1.3e-06 57.0 160 29.4
Lalb_Chr09g0325551 Lupinus albus HOM05D006211 ORTHO05D007202 1.7e-06 56.6 157 29.3
arahy.Tifrunner.gnm1.ann1.Q6MSMD Arachis hypogaea HOM05D006211 ORTHO05D007202 2.3e-06 56.2 162 33.3
arahy.Tifrunner.gnm1.ann1.USP5IX Arachis hypogaea HOM05D006211 ORTHO05D007202 2.3e-06 56.2 162 33.3
TPR.G8109 Trifolium pratense HOM05D006211 ORTHO05D007202 2.3e-06 56.2 158 32.9
AL4G31520 Arabidopsis lyrata HOM05D006211 ORTHO05D007202 3.0e-06 55.8 167 34.1
DCAR_008238 Daucus carota HOM05D006211 ORTHO05D007202 3.0e-06 55.8 162 31.5
Nitab4.5_0000127g0020 Nicotiana tabacum HOM05D006211 ORTHO05D007202 3.0e-06 55.8 164 30.5
Cc08_g03420 Coffea canephora HOM05D006211 ORTHO05D007202 3.9e-06 55.5 95 36.8
Nitab4.5_0000529g0100 Nicotiana tabacum HOM05D006211 ORTHO05D007202 3.9e-06 55.5 165 29.1
Phvul.002G138000 Phaseolus vulgaris HOM05D006211 ORTHO05D007202 3.9e-06 55.5 154 30.5
C04p12710 Brassica napus HOM05D006211 ORTHO05D007202 5.1e-06 55.1 100 38.0
Ca_25191_v3 Cicer arietinum L. HOM05D006211 ORTHO05D007202 5.1e-06 55.1 157 33.1
THA.LOC104798487 Tarenaya hassleriana HOM05D006211 ORTHO05D007202 5.1e-06 55.1 165 32.7
Hund11197 Selenicereus undatus HOM05D006211 ORTHO05D007202 6.6e-06 54.7 165 30.9
CARHR129620 Cardamine hirsuta HOM05D006211 ORTHO05D007202 8.6e-06 54.3 103 37.9


User provided reference genes

Program Settings