Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 4.7e-310 1067.0 538 100.0
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 4.7e-84 316.2 299 55.2
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 3.8e-81 306.6 295 56.9
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-80 305.1 292 56.2
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-80 303.9 310 54.5
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-79 301.2 304 54.6
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-79 300.1 285 56.1
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-79 300.1 285 56.1
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.0e-79 299.3 285 55.8
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.0e-79 299.3 285 55.8
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.8e-79 298.9 285 55.8
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-78 298.1 285 55.8
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-78 297.7 285 55.8
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-77 294.7 304 53.9
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.6e-77 292.7 284 55.3
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.1e-70 269.6 259 56.8
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 9.0e-67 258.8 286 48.3
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.2e-66 258.5 293 46.8
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.4e-66 256.9 293 45.4
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 2.2e-65 254.2 293 45.4
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 6.4e-65 252.7 287 46.3
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.4e-65 252.3 291 46.7
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.2e-64 250.4 281 47.0
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 3.2e-64 250.4 291 45.0
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.6e-63 248.1 292 45.2
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-63 247.7 220 60.9
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.3e-62 245.0 293 45.7
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.3e-62 245.0 293 45.7
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.3e-62 245.0 293 45.7
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 6.7e-62 242.7 285 44.2
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 3.3e-61 240.4 288 44.4
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 6.2e-60 236.1 279 44.8
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 8.1e-60 235.7 284 45.1
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 3.1e-59 233.8 319 42.6
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 5.3e-59 233.0 276 43.8
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 2.6e-58 230.7 290 44.8
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 3.4e-58 230.3 290 42.8
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-58 229.9 197 61.9
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.6e-58 229.2 210 59.0
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.0e-57 228.8 278 45.3
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 2.9e-57 227.3 279 44.1
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 3.8e-57 226.9 282 44.0
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-57 226.9 197 61.4
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 4.9e-57 226.5 367 37.9
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.4e-56 224.9 356 39.9
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 3.2e-56 223.8 290 43.1
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 9.3e-56 222.2 287 43.6
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 3.5e-55 220.3 291 43.6
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 6.0e-55 219.5 291 41.6
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 6.0e-55 219.5 291 41.2
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.0e-55 219.5 291 41.2
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.0e-54 218.8 291 41.2
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.3e-54 218.4 291 41.2
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 1.3e-54 218.4 289 43.9
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 3.0e-54 217.2 291 42.6
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 3.0e-54 217.2 291 42.6
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 3.9e-54 216.9 290 42.8
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 5.1e-54 216.5 290 43.1
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-53 214.5 291 40.5
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-53 214.5 291 40.5
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 3.3e-53 213.8 288 42.4
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 5.7e-53 213.0 290 42.4
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 7.4e-53 212.6 287 42.9
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 7.4e-53 212.6 294 41.5
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 2.1e-52 211.1 282 40.8
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 2.8e-52 210.7 325 36.0
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 4.8e-52 209.9 290 41.7
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 1.1e-51 208.8 281 43.4
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.1e-51 208.8 287 40.1
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 1.8e-51 208.0 293 39.9
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 2.4e-51 207.6 291 41.2
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 2.4e-51 207.6 279 42.3
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 4.1e-51 206.8 291 40.9
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 4.1e-51 206.8 293 40.3
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 4.1e-51 206.8 290 41.4
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 6.9e-51 206.1 279 42.7
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.5e-50 204.9 291 40.2
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 4.5e-50 203.4 293 41.0
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 4.5e-50 203.4 291 39.9
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 5.9e-50 203.0 293 41.0
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 7.6e-50 202.6 291 39.9
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.3e-49 201.8 338 39.9
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.7e-49 201.4 295 40.3
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 3.8e-49 200.3 291 39.9
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 2.5e-48 197.6 287 40.1
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 9.3e-48 195.7 213 46.9
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 2.7e-47 194.1 291 37.5
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 4.6e-47 193.4 274 42.7
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 1.0e-46 192.2 253 41.1
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 3.0e-46 190.7 293 41.6
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 3.9e-46 190.3 284 40.1
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 5.1e-46 189.9 278 43.5
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 5.1e-46 189.9 283 39.9
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 8.7e-46 189.1 290 39.3
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 1.5e-45 188.3 280 39.3
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 2.5e-45 187.6 288 38.5
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 2.5e-45 187.6 284 39.4
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 3.3e-45 187.2 272 40.4
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 4.3e-45 186.8 284 39.4
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 9.7e-45 185.7 298 40.6
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 1.6e-44 184.9 291 38.1
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 1.6e-44 184.9 297 40.1
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.2e-44 184.5 225 41.8
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 4.8e-44 183.3 298 40.3
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 4.1e-43 180.3 296 40.5
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.5e-42 178.3 277 40.4
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 5.9e-42 176.4 290 39.3
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 7.7e-42 176.0 269 37.9
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.0e-41 175.6 163 55.2
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 1.3e-41 175.3 296 39.9
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 1.3e-41 175.3 296 39.9
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.3e-41 175.3 227 42.3
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 2.5e-40 171.0 275 35.3
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.5e-40 171.0 174 52.9
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 3.2e-40 170.6 294 39.5
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 4.2e-40 170.2 294 39.1
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 4.2e-40 170.2 294 39.1
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 4.2e-40 170.2 268 35.8
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.5e-40 169.9 156 54.5
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 3.6e-39 167.2 274 37.2
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.7e-36 158.3 422 29.9
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-36 158.3 164 52.4
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 2.8e-36 157.5 219 41.6
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 6.3e-36 156.4 287 36.2
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-35 155.6 294 35.4
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.4e-35 155.2 214 42.1
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 5.9e-34 149.8 293 33.8
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.1e-32 145.6 202 40.1
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 1.2e-31 142.1 279 34.4
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.1e-31 141.4 270 36.3
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 1.4e-30 138.7 254 37.0
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.0e-30 137.5 282 31.9
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 6.7e-30 136.3 270 36.3
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.3e-28 132.1 169 41.4
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.9e-25 120.9 129 52.7
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.0e-22 112.5 265 30.6
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 3.0e-22 110.9 247 31.2
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-17 94.0 86 54.7
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 1.2e-15 89.0 172 35.5
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-15 88.6 79 54.4
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 8.8e-14 82.8 146 34.9
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.3e-12 79.0 102 40.2
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.7e-12 78.6 88 48.9
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 5.4e-11 73.6 147 29.9
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 9.1e-11 72.8 70 48.6
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 5.5e-08 63.5 173 29.5
SalBow6G3463 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.0e-06 57.4 67 43.3


User provided reference genes

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