Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 6.9e-117 424.1 229 100.0
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 2.0e-87 326.2 198 90.4
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 3.6e-81 305.4 225 76.4
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 7.4e-71 271.2 235 66.0
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 3.7e-70 268.9 213 70.0
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 8.2e-70 267.7 204 71.6
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 3.5e-68 262.3 229 62.9
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 2.9e-67 259.2 205 68.8
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 6.5e-67 258.1 203 69.0
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 1.1e-66 257.3 204 69.1
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 1.1e-66 257.3 227 63.0
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 1.5e-66 256.9 216 68.5
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 1.9e-66 256.5 204 68.1
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 4.2e-66 255.4 204 68.1
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 5.5e-66 255.0 203 70.0
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 5.5e-66 255.0 204 66.7
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 9.4e-66 254.2 205 64.4
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 3.6e-65 252.3 204 66.7
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 4.7e-65 251.9 210 66.7
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 8.0e-65 251.1 204 67.2
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 8.0e-65 251.1 207 67.1
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 1.8e-64 250.0 207 65.7
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 4.0e-64 248.8 214 64.5
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 4.0e-64 248.8 208 66.8
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 5.2e-64 248.4 208 65.4
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 6.8e-64 248.1 205 67.8
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 8.8e-64 247.7 204 65.7
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 8.8e-64 247.7 207 67.6
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 8.8e-64 247.7 205 65.4
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 1.5e-63 246.9 204 66.7
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 1.5e-63 246.9 211 64.9
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 2.0e-63 246.5 203 64.5
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.6e-63 246.1 208 64.9
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 4.4e-63 245.4 209 65.1
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 5.7e-63 245.0 204 66.7
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 5.7e-63 245.0 219 62.6
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 7.5e-63 244.6 204 66.2
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 7.5e-63 244.6 204 64.2
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.5e-63 244.6 219 62.1
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 7.5e-63 244.6 205 65.9
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 9.7e-63 244.2 206 65.0
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 9.7e-63 244.2 204 65.7
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 9.7e-63 244.2 204 65.7
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.3e-62 243.8 219 62.1
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 1.3e-62 243.8 204 65.2
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.7e-62 243.4 207 63.8
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 2.2e-62 243.0 214 63.6
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 2.2e-62 243.0 214 63.6
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 2.2e-62 243.0 204 65.2
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 3.7e-62 242.3 204 67.6
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 3.7e-62 242.3 206 64.6
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.7e-62 242.3 219 61.6
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 4.8e-62 241.9 205 65.9
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 4.8e-62 241.9 242 59.1
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 4.8e-62 241.9 205 66.8
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 6.3e-62 241.5 191 66.5
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 8.3e-62 241.1 206 64.6
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 8.3e-62 241.1 207 64.7
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 8.3e-62 241.1 209 66.5
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 8.3e-62 241.1 205 65.9
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 1.4e-61 240.4 204 65.2
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.8e-61 240.0 206 65.0
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 1.8e-61 240.0 210 63.3
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 3.1e-61 239.2 204 65.2
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 5.3e-61 238.4 215 63.3
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 7.0e-61 238.0 204 62.7
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 9.1e-61 237.7 204 65.7
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 1.2e-60 237.3 206 64.6
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.2e-60 237.3 204 62.3
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 1.2e-60 237.3 204 62.3
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.6e-60 236.9 204 63.2
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 1.6e-60 236.9 218 62.8
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.7e-60 236.1 204 61.8
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 3.5e-60 235.7 204 62.7
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 2.2e-59 233.0 186 65.6
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 2.9e-59 232.6 213 61.0
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 8.5e-59 231.1 204 62.7
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 2.5e-58 229.6 206 61.7
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.5e-58 229.6 195 63.6
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 7.2e-58 228.0 204 62.3
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 7.2e-58 228.0 204 62.3
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 9.4e-58 227.6 204 63.2
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 1.2e-57 227.3 226 57.5
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 1.6e-57 226.9 190 62.6
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 1.6e-57 226.9 206 60.7
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 2.1e-57 226.5 204 60.3
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 2.7e-57 226.1 204 60.8
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 6.1e-57 224.9 213 62.0
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 8.0e-57 224.6 202 61.4
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 1.8e-56 223.4 204 58.8
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 5.2e-56 221.9 203 61.6
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 6.8e-56 221.5 203 60.6
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 2.8e-54 216.1 208 56.7
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 8.3e-54 214.5 204 58.8
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.4e-53 213.8 216 58.3
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 1.8e-53 213.4 190 58.4
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 1.2e-52 210.7 217 57.6
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 1.6e-52 210.3 161 68.9
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.7e-52 209.5 154 69.5
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.7e-52 209.5 154 69.5
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 1.3e-51 207.2 190 59.5
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 7.2e-50 201.4 155 64.5
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 4.7e-49 198.7 164 61.6
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 6.8e-48 194.9 373 38.1
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 2.2e-46 189.9 157 64.3
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 1.4e-45 187.2 142 71.8
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 1.0e-43 181.0 120 83.3
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 8.6e-43 177.9 127 70.9
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 5.6e-42 175.3 127 70.9
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 1.5e-39 167.2 182 53.3
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 7.5e-39 164.9 156 53.8
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 4.6e-36 155.6 202 45.0
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 1.6e-33 147.1 185 45.4
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 2.3e-32 143.3 126 66.7
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 4.9e-30 135.6 120 59.2
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 6.4e-30 135.2 118 63.6
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.2e-29 132.9 142 53.5
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 2.1e-28 130.2 155 51.6
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 6.6e-27 125.2 103 60.2
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 1.1e-24 117.9 187 40.1
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 1.3e-22 110.9 75 78.7
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 1.1e-21 107.8 183 39.9
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 2.4e-21 106.7 127 50.4
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.1e-17 93.6 79 67.1
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 4.0e-16 89.4 88 53.4
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 7.1e-13 78.6 78 60.3
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 2.1e-12 77.0 186 31.7
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 4.6e-12 75.9 79 57.0
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 1.0e-11 74.7 71 62.0
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 6.6e-11 72.0 65 60.0
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.3e-09 67.8 46 76.1
Os02g0225300 Oryza sativa ssp. japonica HOM05D006023 ORTHO05D007377 2.0e-07 60.5 49 57.1


User provided reference genes

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