Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.6e-103 379.4 186 100.0
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 3.6e-63 245.4 188 71.3
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 4.1e-51 205.3 202 57.9
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 2.6e-45 186.0 210 50.0
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 5.7e-45 184.9 203 54.2
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 8.8e-38 161.0 247 44.1
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 3.3e-37 159.1 225 44.4
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.7e-37 158.3 250 42.8
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 5.7e-37 158.3 250 42.8
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.3e-33 147.1 252 39.7
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.9e-32 143.3 222 45.5
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 4.7e-31 138.7 232 41.4
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 8.0e-31 137.9 234 42.7
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 8.0e-31 137.9 234 42.7
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 2.3e-30 136.3 223 40.4
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 5.2e-30 135.2 229 41.0
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 6.8e-30 134.8 228 41.2
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 8.8e-30 134.4 254 38.6
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.2e-29 134.0 234 43.6
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-29 133.7 231 38.5
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.5e-29 133.7 239 40.2
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 3.4e-29 132.5 227 41.0
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 3.4e-29 132.5 237 38.4
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 9.8e-29 131.0 239 39.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 9.8e-29 131.0 236 40.3
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.8e-28 129.4 247 36.8
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.8e-28 129.4 239 38.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.7e-28 129.0 227 37.9
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.7e-28 129.0 227 37.9
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 4.8e-28 128.6 232 38.8
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 6.3e-28 128.3 231 39.8
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.1e-27 127.5 236 40.7
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.1e-27 127.5 229 40.6
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 2.4e-27 126.3 223 38.6
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 2.4e-27 126.3 235 40.4
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.1e-27 125.6 223 38.6
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 4.1e-27 125.6 238 39.1
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 4.1e-27 125.6 238 39.1
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 5.4e-27 125.2 225 38.7
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 7.0e-27 124.8 234 37.2
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.2e-26 124.0 210 41.0
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.2e-26 124.0 224 38.8
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.2e-26 124.0 223 38.1
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.2e-26 124.0 237 38.8
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.6e-26 123.6 232 39.7
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.6e-26 123.6 219 39.7
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.0e-26 123.2 226 39.4
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.0e-26 123.2 227 38.3
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.7e-26 122.9 234 38.0
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.7e-26 122.9 245 38.4
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.7e-26 122.9 239 37.2
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 3.5e-26 122.5 213 40.4
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.9e-26 121.7 234 37.6
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.0e-25 120.9 232 37.5
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.3e-25 120.6 232 36.2
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 1.3e-25 120.6 226 38.9
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.8e-25 119.0 241 38.2
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.0e-25 118.6 228 36.0
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 6.6e-25 118.2 246 35.0
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 6.6e-25 118.2 209 38.8
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.6e-25 117.9 228 36.0
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.5e-24 117.1 223 36.3
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 2.5e-24 116.3 227 36.6
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.2e-24 115.5 222 38.3
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 7.2e-24 114.8 213 37.6
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.5e-24 114.4 222 38.3
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.6e-23 113.6 242 34.7
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.1e-23 113.2 212 36.8
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 2.1e-23 113.2 194 38.7
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 2.1e-23 113.2 232 35.3
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 2.8e-23 112.8 205 36.1
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 2.8e-23 112.8 239 36.8
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 2.8e-23 112.8 220 37.3
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 2.8e-23 112.8 229 36.2
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 3.6e-23 112.5 233 36.1
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 3.6e-23 112.5 236 36.4
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 3.6e-23 112.5 184 40.8
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 4.7e-23 112.1 234 34.6
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.0e-22 110.9 232 36.2
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.4e-22 110.5 241 34.0
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.4e-22 110.5 191 38.7
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.8e-22 110.2 228 35.1
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 6.8e-22 108.2 219 38.4
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 8.9e-22 107.8 200 37.5
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.2e-21 107.5 234 35.0
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.5e-21 107.1 220 35.9
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.0e-21 106.7 251 34.3
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.6e-21 106.3 230 35.2
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 3.4e-21 105.9 213 34.3
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.4e-21 105.5 220 36.8
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 9.8e-21 104.4 205 37.1
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.3e-20 104.0 217 35.0
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.2e-20 103.2 228 37.7
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 2.8e-20 102.8 253 32.4
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.7e-20 102.4 226 32.7
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 5.4e-19 98.6 234 35.5
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 1.6e-18 97.1 216 37.5
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.0e-18 96.7 188 37.2
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.3e-17 93.2 209 33.0
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 6.6e-17 91.7 210 37.1
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.9e-16 90.1 204 33.8
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 2.5e-16 89.7 210 33.3
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 2.5e-16 89.7 210 33.3
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.3e-16 89.0 164 35.4
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 7.3e-16 88.2 157 40.8
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 9.5e-16 87.8 213 36.2
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.2e-15 87.4 215 32.1
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 2.8e-15 86.3 88 51.1
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.7e-15 85.5 211 36.0
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 8.0e-15 84.7 206 34.0
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 8.0e-15 84.7 88 50.0
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.8e-14 83.6 199 34.2
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.3e-14 83.2 93 47.3
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 5.2e-14 82.0 220 31.8
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 6.8e-14 81.6 214 32.7
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 6.8e-14 81.6 214 32.7
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 6.8e-14 81.6 233 31.8
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.2e-13 80.9 208 33.2
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 1.5e-13 80.5 205 33.7
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.0e-13 80.1 188 34.6
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 3.4e-13 79.3 195 30.8
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.4e-13 79.0 116 40.5
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 7.5e-13 78.2 217 30.9
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 9.8e-13 77.8 217 31.8
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.3e-12 77.4 195 33.3
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.7e-12 77.0 219 31.5
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 4.9e-12 75.5 194 33.0
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 6.4e-12 75.1 203 31.5
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 6.4e-12 75.1 203 31.5
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 1.9e-11 73.6 187 34.8
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 1.9e-11 73.6 187 34.8
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 1.9e-11 73.6 187 34.8
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.9e-11 73.6 196 32.1
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 9.2e-11 71.2 199 31.2
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 9.2e-11 71.2 219 31.1
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.7e-10 69.7 185 35.7
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.3e-09 67.4 40 65.0
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.7e-09 67.0 44 65.9
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.7e-09 67.0 47 59.6
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 5.0e-09 65.5 199 30.2
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.1e-08 64.3 194 27.8
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 1.9e-08 63.5 42 61.9
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 5.6e-08 62.0 189 29.6
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.6e-07 60.5 37 62.2
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.1e-07 60.1 40 62.5
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.4e-06 57.4 48 54.2


User provided reference genes

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