Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 6.9e-84 313.9 157 100.0
SGA_v2.0_scaffold56G20038 Striga asiatica HOM05D027511 ORTHO05D010516 1.2e-30 137.1 77 83.1
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 2.7e-19 99.4 94 59.6
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 2.3e-15 86.3 57 75.4
SGA_v2.0_scaffold254G45218 Striga asiatica HOM05D027511 ORTHO05D010516 1.2e-14 84.0 83 49.4
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 1.5e-14 83.6 59 74.6
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 1.3e-13 80.5 57 73.7
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 1.4e-12 77.0 44 79.5
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 5.4e-12 75.1 50 70.0
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 5.4e-12 75.1 47 74.5
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 2.0e-11 73.2 51 66.7
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 2.7e-11 72.8 51 66.7
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 2.7e-11 72.8 50 66.0
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 3.5e-11 72.4 53 66.0
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 7.8e-11 71.2 50 64.0
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 1.3e-10 70.5 98 45.9
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 2.3e-10 69.7 58 60.3
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 3.8e-10 68.9 54 59.3
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 1.1e-09 67.4 58 60.3
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 1.5e-09 67.0 58 60.3
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 1.9e-09 66.6 52 65.4
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 2.5e-09 66.2 50 60.0
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 4.3e-09 65.5 47 66.0
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 5.6e-09 65.1 52 61.5
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 5.6e-09 65.1 56 58.9
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 5.6e-09 65.1 58 56.9
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 1.2e-08 63.9 58 56.9
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 1.2e-08 63.9 52 57.7
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 1.2e-08 63.9 84 46.4
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 1.6e-08 63.5 58 56.9
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 1.6e-08 63.5 56 58.9
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 2.1e-08 63.2 52 57.7
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 2.8e-08 62.8 50 64.0
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 3.6e-08 62.4 56 58.9
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 3.6e-08 62.4 56 53.6
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 4.7e-08 62.0 58 55.2
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 6.1e-08 61.6 58 56.9
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 6.1e-08 61.6 130 40.0
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 8.0e-08 61.2 56 57.1
SGA_v2.0_scaffold48G17843 Striga asiatica HOM05D027511 ORTHO05D010516 8.0e-08 61.2 43 72.1
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.4e-07 60.5 55 60.0
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.4e-07 60.5 55 60.0
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 1.8e-07 60.1 52 57.7
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 1.8e-07 60.1 58 53.4
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 2.3e-07 59.7 50 60.0
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 2.3e-07 59.7 52 55.8
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 2.3e-07 59.7 52 57.7
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 2.3e-07 59.7 52 59.6
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 2.3e-07 59.7 52 59.6
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 2.3e-07 59.7 52 63.5
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 2.3e-07 59.7 56 60.7
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 3.0e-07 59.3 52 55.8
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 3.0e-07 59.3 55 58.2
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.0e-07 59.3 55 58.2
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.0e-07 59.3 55 58.2
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 3.0e-07 59.3 55 58.2
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 4.0e-07 58.9 56 60.7
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 5.2e-07 58.5 55 61.8
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 5.2e-07 58.5 52 57.7
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 8.9e-07 57.8 42 59.5
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 8.9e-07 57.8 46 60.9
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 8.9e-07 57.8 56 53.6
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 1.2e-06 57.4 56 53.6
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 1.2e-06 57.4 56 53.6
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 1.5e-06 57.0 42 64.3
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 3.4e-06 55.8 41 61.0
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 4.4e-06 55.5 46 56.5
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 4.4e-06 55.5 46 56.5
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 4.4e-06 55.5 46 56.5
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 4.4e-06 55.5 46 56.5
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 4.4e-06 55.5 46 56.5
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 5.8e-06 55.1 46 56.5
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 7.5e-06 54.7 57 52.6
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 9.8e-06 54.3 56 51.8
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 9.8e-06 54.3 57 49.1


User provided reference genes

Program Settings