Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 4.9e-169 597.8 320 100.0
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.4e-75 286.6 320 54.1
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 4.2e-64 249.2 303 48.5
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 5.0e-49 199.1 311 41.5
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 5.4e-43 179.1 310 42.3
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 2.9e-36 156.8 318 34.3
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 4.9e-36 156.0 262 39.3
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 1.1e-35 154.8 325 35.7
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 1.4e-35 154.5 313 36.1
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 4.1e-35 152.9 322 37.9
SalBow6G1594 Salvia bowleyana HOM05D004960 ORTHO05D004696 2.3e-33 147.1 258 40.3
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.0e-33 146.7 308 34.4
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 3.6e-31 139.8 314 35.7
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.4e-30 137.9 320 33.8
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.2e-29 134.8 313 35.5
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 1.2e-29 134.8 307 33.9
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 1.2e-29 134.8 312 33.0
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 4.4e-29 132.9 315 36.2
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 1.7e-28 131.0 258 35.7
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.7e-28 131.0 307 29.3
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 3.2e-27 126.7 314 27.7
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.2e-26 124.8 299 33.4
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.6e-26 124.4 306 31.7
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 6.0e-26 122.5 324 31.8
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 7.8e-26 122.1 317 36.0
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 1.3e-25 121.3 313 29.4
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 2.3e-25 120.6 316 31.0
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 6.6e-25 119.0 312 30.1
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 8.6e-25 118.6 325 32.3
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 8.6e-25 118.6 322 32.0
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 1.5e-24 117.9 315 31.4
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 9.5e-24 115.2 303 34.3
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 9.5e-24 115.2 303 34.3
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 9.5e-24 115.2 315 34.3
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 9.5e-24 115.2 324 30.6
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 9.5e-24 115.2 312 30.8
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 9.5e-24 115.2 312 30.8
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.2e-23 114.8 324 30.6
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 1.6e-23 114.4 306 30.1
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 2.1e-23 114.0 308 32.1
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 3.6e-23 113.2 306 31.4
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 1.4e-22 111.3 314 34.1
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 1.4e-22 111.3 316 32.6
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-22 111.3 314 34.4
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-22 111.3 316 32.6
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 1.4e-22 111.3 314 34.4
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 1.8e-22 110.9 312 31.4
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 3.1e-22 110.2 305 30.8
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 5.2e-22 109.4 316 32.0
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 1.2e-21 108.2 302 31.1
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 1.5e-21 107.8 269 33.5
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.0e-21 107.5 300 32.0
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 2.6e-21 107.1 296 32.8
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 4.4e-21 106.3 335 34.0
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 7.6e-21 105.5 314 32.8
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 7.6e-21 105.5 239 34.3
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.2e-20 104.0 304 28.6
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.9e-20 103.6 304 28.3
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 4.9e-20 102.8 316 32.0
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 4.9e-20 102.8 310 29.4
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 4.9e-20 102.8 310 29.4
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 8.4e-20 102.1 319 32.3
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 1.1e-19 101.7 280 31.4
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 1.9e-19 100.9 276 32.2
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.4e-19 100.5 304 27.6
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 9.2e-19 98.6 296 30.1
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 1.2e-18 98.2 304 30.6
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.5e-18 96.7 304 29.6
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 6.0e-18 95.9 325 30.8
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 6.0e-18 95.9 300 28.3
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 7.8e-18 95.5 321 32.1
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 1.3e-17 94.7 294 32.3
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 1.7e-17 94.4 317 30.0
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.7e-17 94.4 285 31.9
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.7e-17 94.4 285 31.9
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.7e-17 94.4 296 27.0
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 5.1e-17 92.8 206 34.0
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 5.1e-17 92.8 288 30.6
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 6.6e-17 92.4 203 33.5
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 8.7e-17 92.0 262 33.6
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 8.7e-17 92.0 303 27.4
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 1.1e-16 91.7 287 26.5
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 4.3e-16 89.7 292 26.4
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 4.3e-16 89.7 249 31.3
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 5.6e-16 89.4 295 27.5
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 7.3e-16 89.0 309 28.8
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 7.3e-16 89.0 213 31.5
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 9.6e-16 88.6 317 30.6
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-15 88.2 304 29.6
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 1.6e-15 87.8 302 29.1
Migut.J01427 Erythranthe guttata HOM05D015143 ORTHO05D004696 2.1e-15 87.4 329 29.2
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 3.1e-14 83.6 221 33.0
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.1e-14 83.6 308 26.9
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 4.0e-14 83.2 321 30.5
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 6.9e-14 82.4 255 31.8
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 6.9e-14 82.4 293 27.6
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.6e-13 80.5 306 28.4
Migut.J01429 Erythranthe guttata HOM05D015143 ORTHO05D004696 3.4e-13 80.1 299 30.1
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 3.4e-13 80.1 298 26.8
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 4.4e-13 79.7 305 26.9
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 5.8e-13 79.3 317 30.0
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 2.2e-12 77.4 306 27.8
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 3.8e-12 76.6 390 27.2
Peaxi162Scf00457g00315 Petunia axillaris HOM05D004960 ORTHO05D004696 4.9e-12 76.3 131 35.1
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 6.4e-12 75.9 296 27.0
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 6.4e-12 75.9 296 27.0
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.4e-11 74.7 297 25.9
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 1.9e-11 74.3 300 24.7
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.9e-11 74.3 330 26.7
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 2.4e-11 73.9 314 26.8
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 3.2e-11 73.6 292 26.7
SalBow6G6841 Salvia bowleyana HOM05D015143 ORTHO05D004696 4.2e-11 73.2 323 29.4
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-10 71.6 297 24.2
SalBow6G2608 Salvia bowleyana HOM05D050058 ORTHO05D004696 1.6e-10 71.2 295 27.1
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 2.1e-10 70.9 298 26.8
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 2.1e-10 70.9 303 26.1
SalBow6G3434 Salvia bowleyana HOM05D015143 ORTHO05D004696 2.7e-10 70.5 323 28.8
Dinv41298 Davidia involucrata HOM05D004960 ORTHO05D004696 3.5e-10 70.1 109 35.8
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.5e-10 70.1 234 28.2
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 7.8e-10 68.9 257 25.7
SalBow6G5998 Salvia bowleyana HOM05D050058 ORTHO05D004696 1.0e-09 68.6 298 28.5
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.3e-09 68.2 291 25.4
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 1.7e-09 67.8 119 35.3
Migut.J01428 Erythranthe guttata HOM05D015143 ORTHO05D004696 2.3e-09 67.4 304 29.9
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 3.0e-09 67.0 291 25.1
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.0e-09 67.0 311 25.1
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.6e-09 65.9 303 23.4
Carub.0003s3295 Capsella rubella HOM05D004960 ORTHO05D004696 1.1e-08 65.1 278 28.4
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 1.1e-08 65.1 294 27.9
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 1.5e-08 64.7 309 24.3
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 2.5e-08 63.9 312 26.3
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 5.6e-08 62.8 310 25.8
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 5.6e-08 62.8 303 25.1
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.6e-08 62.8 217 24.0
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 5.6e-08 62.8 285 26.0
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 1.6e-07 61.2 296 26.4
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 2.8e-07 60.5 238 26.9
Cc06_g13850 Coffea canephora HOM05D012567 ORTHO05D004696 8.1e-07 58.9 293 25.6
HanXRQChr03g0074181 Helianthus annuus HOM05D012567 ORTHO05D004696 1.1e-06 58.5 233 25.3
BcaC06g36453 Brassica carinata HOM05D004960 ORTHO05D004696 1.4e-06 58.2 208 29.3
Eucgr.F04013 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.8e-06 57.8 217 24.9
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 5.3e-06 56.2 314 25.2
ATR0987G009 Amborella trichopoda HOM05D001062 ORTHO05D000884 6.9e-06 55.8 326 27.0
Sc06g0003000 Simmondsia chinensis HOM05D001062 ORTHO05D000884 6.9e-06 55.8 294 27.2
Actinidia35990 Actinidia chinensis HOM05D004960 ORTHO05D004696 9.0e-06 55.5 305 23.3


User provided reference genes

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