Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 1.3e-89 333.2 193 100.0
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 5.9e-61 238.0 196 68.4
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 2.0e-40 169.9 197 53.3
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 2.0e-37 159.8 193 53.9
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 2.9e-36 156.0 201 47.8
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 2.8e-34 149.4 202 50.0
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 5.2e-33 145.2 199 47.2
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 6.8e-33 144.8 191 47.6
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 2.6e-32 142.9 189 48.1
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 4.4e-32 142.1 186 47.8
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 4.4e-32 142.1 186 47.8
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 9.8e-32 141.0 193 48.7
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.2e-31 139.8 193 47.2
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 2.2e-31 139.8 191 46.6
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 2.8e-31 139.4 194 46.9
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 3.7e-31 139.0 194 45.9
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 4.9e-31 138.7 197 45.7
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 4.9e-31 138.7 189 47.6
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 1.1e-30 137.5 191 47.1
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.8e-30 136.7 188 47.9
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 4.1e-30 135.6 188 47.3
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 4.1e-30 135.6 196 46.9
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.6e-29 133.7 186 43.5
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 2.0e-29 133.3 194 44.8
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 4.6e-29 132.1 190 44.7
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.6e-29 132.1 205 41.0
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 4.6e-29 132.1 187 45.5
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 1.0e-28 131.0 193 46.6
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.3e-28 130.6 187 46.0
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.3e-28 129.8 198 46.5
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 2.3e-28 129.8 190 50.5
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 3.9e-28 129.0 187 42.8
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 5.0e-28 128.6 187 47.1
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 6.6e-28 128.3 198 41.9
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 6.6e-28 128.3 193 42.5
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 8.6e-28 127.9 186 43.5
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 8.6e-28 127.9 192 44.8
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 8.6e-28 127.9 184 46.7
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 1.1e-27 127.5 187 43.3
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 1.1e-27 127.5 195 46.7
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.1e-27 127.5 195 46.2
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.1e-27 127.5 190 46.3
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.5e-27 127.1 192 42.2
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.5e-27 127.1 187 41.7
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 5.6e-27 125.2 197 43.1
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 5.6e-27 125.2 186 42.5
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 5.6e-27 125.2 189 46.0
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 7.3e-27 124.8 190 46.8
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 9.5e-27 124.4 195 40.0
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 1.2e-26 124.0 199 40.7
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 1.6e-26 123.6 205 41.0
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 2.1e-26 123.2 193 41.5
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 4.7e-26 122.1 186 44.1
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 4.7e-26 122.1 187 43.3
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 6.1e-26 121.7 189 44.4
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 8.0e-26 121.3 181 45.9
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 8.0e-26 121.3 181 44.2
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 8.0e-26 121.3 192 42.7
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.0e-25 120.9 196 40.8
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.4e-25 120.6 186 44.1
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.4e-25 120.6 197 44.2
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.4e-25 120.6 189 42.3
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.8e-25 120.2 187 44.4
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 1.8e-25 120.2 197 40.6
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.3e-25 119.8 191 44.0
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 2.3e-25 119.8 189 43.9
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.1e-25 119.4 184 44.0
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.1e-25 119.4 188 43.1
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 6.8e-25 118.2 191 43.5
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 6.8e-25 118.2 195 41.5
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 8.9e-25 117.9 187 41.7
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 1.2e-24 117.5 196 41.3
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.5e-24 117.1 188 42.6
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 2.0e-24 116.7 162 46.3
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.0e-24 116.7 194 40.7
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 2.6e-24 116.3 187 41.2
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 2.6e-24 116.3 163 49.7
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 4.4e-24 115.5 164 47.6
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 7.5e-24 114.8 189 41.8
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.2e-23 113.2 186 39.8
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.7e-23 112.5 185 42.2
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 8.3e-23 111.3 190 42.6
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.2e-22 109.4 195 40.0
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 5.4e-22 108.6 192 40.6
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 7.0e-22 108.2 190 39.5
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 9.2e-22 107.8 190 39.5
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 9.2e-22 107.8 190 39.5
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 9.2e-22 107.8 190 39.5
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 9.2e-22 107.8 188 38.3
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 1.6e-21 107.1 190 38.4
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 2.0e-21 106.7 189 38.6
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.7e-21 106.3 189 38.6
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 2.7e-21 106.3 185 42.2
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 2.7e-21 106.3 193 47.7
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 3.5e-21 105.9 190 38.9
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 3.5e-21 105.9 190 38.4
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 3.5e-21 105.9 190 38.9
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 3.5e-21 105.9 190 38.4
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 3.5e-21 105.9 167 44.9
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 4.6e-21 105.5 190 38.4
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 4.6e-21 105.5 190 38.4
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 4.6e-21 105.5 189 38.6
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 6.0e-21 105.1 184 39.7
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.3e-20 104.0 186 39.2
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 3.0e-20 102.8 190 37.4
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 3.0e-20 102.8 189 37.6
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.0e-20 102.8 192 38.5
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 3.9e-20 102.4 192 36.5
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 1.1e-19 100.9 190 37.4
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 1.1e-19 100.9 190 37.4
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 1.9e-19 100.1 166 42.8
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 2.1e-18 96.7 172 38.4
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 4.7e-18 95.5 162 43.2
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 4.7e-18 95.5 186 37.1
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.1e-17 94.4 188 36.2
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.1e-17 94.4 162 42.6
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.4e-17 94.0 187 38.5
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 5.2e-17 92.0 181 40.3
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.2e-16 90.9 188 35.1
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.2e-16 90.9 187 36.9
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 2.0e-16 90.1 187 35.8
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.6e-16 89.7 188 35.1
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.6e-16 89.7 186 35.5
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 3.4e-16 89.4 188 34.6
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 3.4e-16 89.4 188 37.2
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 3.4e-16 89.4 188 37.2
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 4.4e-16 89.0 183 36.1
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 7.5e-16 88.2 187 35.8
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 7.5e-16 88.2 187 35.3
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 7.5e-16 88.2 187 35.8
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 9.8e-16 87.8 157 39.5
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 3.7e-15 85.9 184 37.0
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 3.7e-15 85.9 160 41.9
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 4.9e-15 85.5 186 36.0
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 6.4e-15 85.1 198 40.4
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 6.4e-15 85.1 81 55.6
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 6.4e-15 85.1 109 45.0
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 1.3e-12 77.4 82 54.9
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 7.3e-11 71.6 159 32.7
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 3.6e-10 69.3 189 36.0
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 4.7e-10 68.9 160 32.5
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 8.1e-10 68.2 187 31.0
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 8.1e-10 68.2 173 34.7
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 1.1e-09 67.8 166 33.1
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 2.3e-09 66.6 184 33.2
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 2.3e-09 66.6 49 67.3
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 4.0e-09 65.9 81 45.7
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 1.2e-08 64.3 185 27.0
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.7e-07 60.5 216 28.2
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 8.4e-07 58.2 146 32.9
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 8.4e-07 58.2 158 31.0
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 1.1e-06 57.8 192 28.1
SEGI_30051 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.1e-06 55.8 146 30.8
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 4.1e-06 55.8 180 28.3


User provided reference genes

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