Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 1.1e-237 826.2 421 100.0
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 1.1e-224 783.1 425 94.8
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 4.1e-160 568.5 520 62.7
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 3.4e-154 548.9 450 67.1
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 3.4e-154 548.9 451 67.2
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 5.8e-154 548.1 444 67.8
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 1.3e-153 547.0 450 66.7
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 2.9e-153 545.8 438 67.6
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 4.9e-153 545.0 452 66.8
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 3.9e-150 535.4 460 66.1
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 6.6e-150 534.6 477 63.1
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 9.6e-149 530.8 373 72.9
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 1.6e-148 530.0 370 73.2
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 4.8e-148 528.5 382 72.0
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.0e-147 525.4 442 64.5
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 3.4e-146 522.3 462 62.6
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 3.8e-145 518.8 440 65.9
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 2.4e-144 516.2 443 64.8
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 1.6e-143 513.5 483 61.3
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.6e-143 513.5 458 62.0
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 7.9e-143 511.1 447 64.4
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 6.7e-142 508.1 443 63.9
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 8.7e-142 507.7 451 61.4
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 3.3e-141 505.8 447 63.5
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 7.4e-141 504.6 450 64.2
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 3.7e-140 502.3 441 64.6
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 4.8e-140 501.9 434 64.3
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 6.9e-139 498.0 451 61.0
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 1.5e-138 496.9 356 71.9
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 3.4e-138 495.7 448 61.4
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 3.4e-138 495.7 442 62.7
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 5.8e-138 495.0 448 61.6
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 5.8e-138 495.0 467 61.2
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 7.6e-138 494.6 368 68.8
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 1.3e-137 493.8 447 61.1
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 2.9e-137 492.7 448 61.8
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 3.8e-137 492.3 446 61.0
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 1.1e-136 490.7 462 60.0
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 1.1e-136 490.7 391 66.2
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.4e-136 490.3 434 62.4
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.9e-136 490.0 447 61.1
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 4.2e-136 488.8 446 62.6
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 4.2e-136 488.8 360 69.2
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 4.2e-136 488.8 449 60.8
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 5.5e-136 488.4 450 61.8
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 5.5e-136 488.4 447 60.9
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 7.1e-136 488.0 447 59.5
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 7.1e-136 488.0 445 62.9
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 1.2e-135 487.3 450 61.6
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.0e-135 485.0 450 59.8
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 7.9e-135 484.6 380 66.8
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 7.9e-135 484.6 454 60.6
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.8e-134 483.4 458 61.8
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 3.9e-134 482.3 467 58.9
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 5.1e-134 481.9 456 61.8
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 6.7e-134 481.5 321 78.8
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 1.1e-133 480.7 446 60.5
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 1.1e-133 480.7 451 61.2
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 1.5e-133 480.3 446 60.5
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 1.5e-133 480.3 441 61.0
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 2.5e-133 479.6 363 68.3
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 3.3e-133 479.2 358 68.7
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 4.3e-133 478.8 377 68.2
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.6e-132 476.9 381 65.6
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 1.6e-132 476.9 425 61.9
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 2.1e-132 476.5 352 69.0
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.8e-132 476.1 458 59.0
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 6.2e-132 474.9 370 67.6
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 6.2e-132 474.9 352 68.8
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 8.2e-132 474.6 450 59.8
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 8.2e-132 474.6 439 60.6
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.1e-131 474.2 381 65.6
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 6.9e-131 471.5 437 61.3
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 6.9e-131 471.5 341 71.8
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 1.2e-130 470.7 359 66.6
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.2e-130 470.7 439 59.9
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 5.8e-130 468.4 464 57.5
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 7.6e-130 468.0 373 66.2
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 7.6e-130 468.0 409 62.3
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 6.5e-129 464.9 371 65.0
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 3.2e-128 462.6 427 59.5
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 5.5e-128 461.8 439 59.7
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 5.5e-128 461.8 415 60.2
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 7.1e-128 461.5 428 58.9
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 1.2e-127 460.7 433 59.6
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.2e-127 460.7 428 60.3
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 2.1e-127 459.9 365 65.2
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.3e-126 457.2 427 59.7
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 5.1e-126 455.3 360 65.3
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 8.7e-126 454.5 428 58.6
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 8.7e-126 454.5 444 58.3
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.1e-125 454.1 428 58.9
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 1.5e-125 453.8 432 58.6
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 9.7e-125 451.1 434 58.3
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 9.7e-125 451.1 351 66.4
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 5.5e-120 435.3 444 57.4
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 9.3e-120 434.5 336 66.7
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 9.3e-120 434.5 336 66.7
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 4.3e-117 425.6 322 66.8
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 3.7e-116 422.5 419 57.5
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 6.9e-115 418.3 319 66.5
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 2.6e-114 416.4 333 65.5
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 8.5e-113 411.4 329 64.7
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 4.2e-112 409.1 320 68.4
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.1e-107 394.4 278 69.1
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 6.5e-105 385.2 447 52.3
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 8.5e-105 384.8 253 74.7
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 8.5e-105 384.8 299 67.6
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 3.0e-102 376.3 382 52.4
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 2.0e-98 363.6 303 67.7
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 3.2e-96 356.3 338 53.8
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 6.7e-94 348.6 442 45.2
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 2.9e-89 333.2 287 61.7
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 8.0e-87 325.1 301 55.8
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.8e-86 323.9 241 68.9
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.5e-85 320.9 201 79.1
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.8e-83 313.9 346 54.3
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 4.1e-83 312.8 305 54.1
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 1.5e-80 304.3 232 65.5
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 1.4e-70 271.2 281 50.9
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 1.7e-68 264.2 339 44.5
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 7.8e-66 255.4 280 51.4
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 1.5e-64 251.1 271 52.8
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 1.2e-63 248.1 281 47.7
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 2.3e-62 243.8 178 68.0
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 1.3e-49 201.4 185 58.4
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 4.3e-48 196.4 228 51.3
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 2.1e-47 194.1 190 56.3
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 5.6e-40 169.5 203 55.2
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 1.0e-33 148.7 396 32.3
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 1.1e-30 138.7 121 62.8
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.1e-27 128.6 84 75.0
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 3.5e-26 123.6 83 72.3
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 1.8e-25 121.3 76 72.4
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 6.9e-22 109.4 73 72.6
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 5.8e-21 106.3 62 79.0
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.1e-19 102.1 73 68.5
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 3.7e-15 87.0 100 49.0
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 8.4e-12 75.9 57 64.9
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 7.9e-10 69.3 54 68.5
MSTRG.17096 Avicennia marina HOM05D005239 ORTHO05D006698 2.4e-06 57.8 34 79.4


User provided reference genes

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