Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 4.6e-152 541.2 273 100.0
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 9.8e-78 294.3 192 80.2
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 5.4e-60 235.3 193 66.3
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 6.0e-59 231.9 192 66.1
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 3.0e-58 229.6 170 71.2
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 1.6e-56 223.8 165 67.9
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 4.7e-56 222.2 193 64.8
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 3.4e-54 216.1 195 61.5
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.9e-53 213.0 192 61.5
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 8.3e-53 211.5 171 64.3
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.1e-52 211.1 161 66.5
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.1e-52 211.1 197 59.9
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.9e-52 210.3 183 62.3
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 3.2e-52 209.5 197 59.4
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.1e-52 209.1 195 56.9
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 4.1e-52 209.1 195 56.9
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.2e-51 207.6 198 59.1
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 2.1e-51 206.8 195 59.0
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 2.7e-51 206.5 192 58.3
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 4.6e-51 205.7 191 58.1
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 4.6e-51 205.7 192 57.8
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 4.6e-51 205.7 192 57.8
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.3e-50 204.1 192 57.3
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.7e-50 203.8 171 63.7
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 2.3e-50 203.4 196 56.6
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 2.3e-50 203.4 195 58.5
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.3e-50 203.4 178 59.0
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 3.0e-50 203.0 198 56.1
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 3.9e-50 202.6 195 56.9
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 6.6e-50 201.8 196 57.1
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 8.6e-50 201.4 191 57.6
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 8.6e-50 201.4 202 57.4
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.9e-49 200.3 204 56.4
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 2.5e-49 199.9 197 57.9
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 5.6e-49 198.7 197 55.8
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 9.6e-49 198.0 196 57.7
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.6e-48 197.2 194 58.8
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.6e-48 197.2 196 56.1
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.6e-48 197.2 197 56.9
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 2.8e-48 196.4 198 56.6
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 6.2e-48 195.3 195 56.9
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 8.1e-48 194.9 189 55.6
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 8.1e-48 194.9 197 55.8
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 8.1e-48 194.9 198 53.5
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.1e-47 194.5 194 54.1
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.4e-47 194.1 194 54.1
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.4e-47 194.1 206 54.4
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 1.8e-47 193.7 203 52.2
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.4e-47 193.4 194 55.2
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 4.0e-47 192.6 197 55.3
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 5.2e-47 192.2 207 52.7
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 6.8e-47 191.8 197 55.8
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.2e-46 191.0 197 52.8
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.2e-46 191.0 176 56.2
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.2e-46 191.0 192 56.2
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.2e-46 191.0 197 53.8
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.2e-46 191.0 180 57.2
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.5e-46 190.7 189 58.2
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.5e-46 190.7 189 58.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 2.0e-46 190.3 194 56.2
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 2.0e-46 190.3 197 53.3
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 2.6e-46 189.9 192 55.7
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.6e-46 189.9 195 54.9
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 5.8e-46 188.7 207 53.1
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 7.6e-46 188.3 190 56.8
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 7.6e-46 188.3 193 55.4
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 7.6e-46 188.3 190 56.8
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 7.6e-46 188.3 183 56.3
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.7e-45 187.2 197 53.3
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 2.9e-45 186.4 208 53.8
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.8e-45 186.0 202 51.0
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 4.9e-45 185.7 202 50.0
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 8.4e-45 184.9 197 51.3
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 8.4e-45 184.9 189 55.6
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 1.4e-44 184.1 176 58.0
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.9e-44 183.7 198 51.5
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.9e-44 183.7 206 51.9
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.9e-44 183.7 175 54.3
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 1.9e-44 183.7 198 51.5
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.4e-44 183.3 184 56.5
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.4e-44 183.3 206 52.4
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 3.2e-44 183.0 189 52.9
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 3.2e-44 183.0 197 54.3
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 4.2e-44 182.6 202 49.5
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 4.2e-44 182.6 209 53.1
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 7.1e-44 181.8 199 51.8
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.6e-43 180.6 199 50.3
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.6e-43 180.6 295 41.4
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.1e-43 180.3 203 52.7
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.5e-43 179.5 189 52.9
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 6.0e-43 178.7 199 50.8
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 7.8e-43 178.3 140 62.9
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.0e-42 177.9 218 51.4
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 1.0e-42 177.9 200 48.5
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 1.5e-41 174.1 196 50.0
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 3.3e-41 172.9 203 48.8
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 4.3e-41 172.6 252 42.1
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 5.6e-41 172.2 186 51.6
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.1e-40 170.2 196 51.0
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.8e-40 169.9 196 49.0
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 2.8e-40 169.9 218 48.2
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 4.8e-40 169.1 167 57.5
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 8.1e-40 168.3 189 51.9
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 1.4e-39 167.5 196 50.0
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.8e-39 167.2 187 48.7
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 1.8e-39 167.2 195 47.7
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 6.9e-39 165.2 189 47.6
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 9.0e-39 164.9 191 50.3
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.5e-38 164.1 193 49.2
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 2.0e-38 163.7 191 46.6
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.2e-37 160.2 187 51.9
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 2.2e-37 160.2 194 50.0
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.2e-37 160.2 190 48.9
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.9e-37 159.8 156 57.1
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 3.2e-36 156.4 194 46.9
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 4.2e-36 156.0 192 49.5
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 9.3e-36 154.8 192 49.0
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 9.3e-36 154.8 192 49.0
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 2.7e-35 153.3 192 48.4
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 7.8e-35 151.8 152 53.3
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.1e-31 141.4 177 46.9
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 2.4e-31 140.2 156 52.6
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.5e-30 137.5 197 43.7
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.7e-29 134.0 190 43.7
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 2.4e-28 130.2 114 55.3
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 5.4e-28 129.0 176 41.5
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 2.1e-27 127.1 174 43.7
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 2.7e-27 126.7 177 42.4
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.9e-26 122.9 99 61.6
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 3.3e-25 119.8 101 59.4
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.4e-25 118.6 99 59.6
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 4.5e-22 109.4 92 62.0
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.3e-21 107.8 106 49.1
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.4e-20 104.4 175 41.7
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 3.5e-19 99.8 114 46.5
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.3e-18 97.8 145 36.6
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 5.1e-18 95.9 118 47.5
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 1.2e-14 84.7 74 60.8
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 1.2e-14 84.7 74 60.8
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 4.5e-14 82.8 100 47.0
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 7.6e-14 82.0 100 45.0
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 5.0e-13 79.3 156 34.0
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 2.5e-12 77.0 75 56.0
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.2e-12 76.6 49 77.6
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 4.2e-12 76.3 130 35.4
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.1e-11 73.9 152 33.6
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 6.1e-11 72.4 59 69.5
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.5e-09 67.8 126 34.1
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 8.2e-08 62.0 65 52.3
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.4e-07 61.2 99 40.4
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 4.5e-06 56.2 39 61.5


User provided reference genes

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