Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 2.0e-62 242.3 124 100.0
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 9.7e-41 170.2 123 72.4
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.4e-39 166.4 123 69.9
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.8e-37 158.3 125 67.2
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 2.5e-36 155.6 126 61.1
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.5e-36 155.6 122 66.4
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.2e-36 155.2 121 66.9
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 7.2e-36 154.1 125 65.6
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 7.2e-36 154.1 119 66.4
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.2e-35 153.3 119 65.5
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.1e-35 152.5 117 62.4
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 2.1e-35 152.5 116 65.5
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 2.7e-35 152.1 127 65.4
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 7.9e-35 150.6 119 66.4
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 7.9e-35 150.6 119 63.9
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 7.9e-35 150.6 116 60.3
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.4e-34 149.8 117 61.5
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.4e-34 149.8 117 61.5
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 2.3e-34 149.1 116 60.3
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 8.8e-34 147.1 129 63.6
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.5e-33 146.4 124 63.7
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.1e-31 140.2 123 59.3
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.0e-31 137.5 131 58.0
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 7.0e-31 137.5 121 59.5
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 7.0e-31 137.5 115 60.0
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.2e-30 136.7 119 60.5
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 4.5e-30 134.8 124 60.5
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.3e-29 133.3 123 59.3
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.2e-29 132.5 121 59.5
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 3.8e-29 131.7 119 54.6
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.1e-28 130.2 118 59.3
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.1e-28 130.2 120 56.7
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 1.5e-28 129.8 115 59.1
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.5e-28 129.8 125 54.4
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.5e-28 129.8 138 53.6
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.5e-28 129.0 122 56.6
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 3.2e-28 128.6 133 52.6
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.2e-28 128.3 122 57.4
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.5e-28 127.9 120 56.7
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 7.2e-28 127.5 124 53.2
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 9.4e-28 127.1 121 56.2
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 2.7e-27 125.6 123 55.3
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.6e-27 125.2 127 55.1
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.6e-27 125.2 127 55.1
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.6e-27 125.2 127 55.9
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.6e-27 125.2 122 55.7
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.1e-27 124.4 127 55.9
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 6.1e-27 124.4 113 55.8
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 8.0e-27 124.0 116 56.9
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.0e-26 123.6 118 55.1
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.0e-26 123.6 137 51.8
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.3e-26 122.5 132 50.8
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 3.0e-26 122.1 122 56.6
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 5.2e-26 121.3 123 52.8
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 2.0e-25 119.4 111 54.1
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.3e-25 118.6 129 52.7
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 4.4e-25 118.2 122 56.6
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 5.7e-25 117.9 132 50.0
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.2e-24 115.9 122 54.9
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.1e-23 113.6 130 51.5
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.8e-23 112.8 124 53.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.8e-23 112.8 124 53.2
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 1.8e-23 112.8 125 52.8
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 3.1e-23 112.1 144 48.6
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 4.1e-23 111.7 134 49.3
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 9.1e-23 110.5 121 50.4
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.6e-22 109.8 108 53.7
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.6e-22 109.8 122 54.1
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.9e-22 107.8 120 51.7
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.0e-21 107.1 112 54.5
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.3e-21 106.7 126 50.0
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.3e-21 106.7 126 50.0
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.3e-21 106.7 124 46.8
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 2.9e-21 105.5 128 50.0
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 2.9e-21 105.5 112 46.4
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.0e-21 104.8 123 43.9
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 6.5e-21 104.4 143 44.8
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 6.5e-21 104.4 124 46.0
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.5e-21 104.4 127 46.5
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.5e-20 103.2 125 43.2
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.9e-20 102.8 118 50.0
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 2.5e-20 102.4 155 41.9
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.5e-20 102.4 112 51.8
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 3.2e-20 102.1 120 44.2
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.2e-20 102.1 126 42.1
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 4.2e-20 101.7 113 51.3
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 7.2e-20 100.9 116 50.9
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.2e-19 100.1 114 50.0
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.1e-19 99.4 114 49.1
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.1e-19 99.4 114 49.1
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.1e-19 99.4 119 49.6
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.7e-19 99.0 122 46.7
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.7e-19 99.0 116 48.3
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 4.7e-19 98.2 114 50.0
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.1e-19 97.8 119 48.7
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 8.0e-19 97.4 116 47.4
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 8.0e-19 97.4 123 44.7
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.0e-18 97.1 117 47.9
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.8e-18 96.3 114 51.8
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.8e-18 96.3 114 51.8
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.8e-18 96.3 114 51.8
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.8e-18 96.3 121 48.8
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.8e-18 96.3 115 49.6
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 2.3e-18 95.9 116 50.9
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 3.0e-18 95.5 118 49.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 3.0e-18 95.5 96 55.2
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.2e-18 94.7 101 54.5
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 5.2e-18 94.7 117 45.3
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 6.8e-18 94.4 119 48.7
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 8.8e-18 94.0 114 50.0
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 8.8e-18 94.0 114 50.9
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 8.8e-18 94.0 114 50.9
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 8.8e-18 94.0 117 47.9
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.8e-18 94.0 117 46.2
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.2e-17 93.6 119 48.7
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 1.5e-17 93.2 111 47.7
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.0e-17 92.8 126 49.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.0e-17 92.8 115 44.3
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 2.0e-17 92.8 115 49.6
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 2.0e-17 92.8 115 46.1
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 3.4e-17 92.0 135 42.2
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 4.4e-17 91.7 115 48.7
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 9.8e-17 90.5 121 45.5
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 9.8e-17 90.5 111 49.5
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.3e-16 90.1 107 47.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.7e-16 89.7 144 39.6
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.7e-16 89.7 101 53.5
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-16 89.4 108 49.1
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.2e-16 89.4 113 47.8
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 4.8e-16 88.2 142 38.0
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.1e-15 87.0 118 47.5
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.4e-15 86.7 109 47.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.8e-15 86.3 117 44.4
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 1.8e-15 86.3 138 42.8
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 5.4e-15 84.7 135 40.7
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 7.0e-15 84.3 129 41.1
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 7.0e-15 84.3 135 40.7
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 9.1e-15 84.0 113 46.9
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 4.5e-14 81.6 125 43.2
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.3e-13 80.1 132 40.9
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.8e-13 78.6 134 41.8
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 8.5e-13 77.4 74 50.0
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.5e-12 75.9 114 43.9
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 2.7e-11 72.4 81 51.9
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 2.7e-11 72.4 81 51.9
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 3.6e-11 72.0 107 40.2
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 6.1e-11 71.2 91 45.1
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 8.0e-11 70.9 121 43.0
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.4e-10 70.1 123 39.0
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.8e-10 69.7 164 30.5
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.3e-10 69.3 89 44.9
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 5.2e-10 68.2 163 33.1
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 5.2e-10 68.2 123 40.7
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.5e-09 66.6 117 37.6
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.6e-09 65.9 163 29.4
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 4.4e-09 65.1 127 38.6
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 5.7e-09 64.7 109 36.7
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 9.8e-09 63.9 136 35.3
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 9.8e-09 63.9 125 37.6
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.3e-08 63.5 143 37.1
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 1.7e-08 63.2 125 36.0
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 2.8e-08 62.4 113 38.9
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 3.7e-08 62.0 143 32.9
Haze_21743 Corylus avellana HOM05D001798 ORTHO05D005040 6.3e-08 61.2 104 38.5
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 6.3e-08 61.2 98 38.8
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.1e-07 60.5 99 41.4
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 1.1e-07 60.5 114 37.7
Cfa013272 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.8e-07 59.7 101 35.6
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 5.4e-07 58.2 125 32.0
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 1.6e-06 56.6 98 38.8
Cpa.g.sc95.59 Carica papaya HOM05D001798 ORTHO05D005040 5.9e-06 54.7 96 38.5


User provided reference genes

Program Settings