Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23253 Striga asiatica HOM05D007223 ORTHO05D008932 1.1e-89 333.2 165 100.0
MSTRG.6217 Avicennia marina HOM05D007223 ORTHO05D008932 3.3e-44 182.2 177 59.3
vmacro13125 Vaccinium macrocarpon HOM05D007223 ORTHO05D008932 1.4e-39 166.8 127 66.9
Oeu042168.1 Olea europaea HOM05D007223 ORTHO05D008932 3.2e-39 165.6 118 73.7
Dinv41246 Davidia involucrata HOM05D007223 ORTHO05D008932 2.7e-38 162.5 174 54.6
Rhsim01G0004500 Rhododendron simsii HOM05D007223 ORTHO05D008932 6.0e-38 161.4 123 66.7
GSVIVG01029215001 Vitis vinifera HOM05D007223 ORTHO05D008932 6.0e-38 161.4 159 56.6
Cc06_g13230 Coffea canephora HOM05D007223 ORTHO05D008932 7.8e-38 161.0 173 54.9
MSTRG.19707 Avicennia marina HOM05D007223 ORTHO05D008932 1.0e-37 160.6 137 64.2
Potri.006G166900 Populus trichocarpa HOM05D007223 ORTHO05D008932 3.0e-37 159.1 163 55.8
Hma1.2p1_1025F.1_g249310 Hydrangea macrophylla HOM05D007223 ORTHO05D008932 3.9e-37 158.7 113 72.6
Potri.018G092300 Populus trichocarpa HOM05D007223 ORTHO05D008932 3.9e-37 158.7 165 55.2
CSS0040203 Camellia sinensis var. sinensis HOM05D007223 ORTHO05D008932 1.1e-36 157.1 169 54.4
Manes.14G153900 Manihot esculenta HOM05D007223 ORTHO05D008932 1.5e-36 156.8 161 55.9
Actinidia04146 Actinidia chinensis HOM05D007223 ORTHO05D008932 2.5e-36 156.0 164 53.0
Gohir.D08G093900 Gossypium hirsutum HOM05D007223 ORTHO05D008932 3.3e-36 155.6 115 69.6
PGR102G0813 Punica granatum HOM05D007223 ORTHO05D008932 5.6e-36 154.8 153 56.9
QL02p097776 Quercus lobata HOM05D007223 ORTHO05D008932 5.6e-36 154.8 157 55.4
Gorai.004G099600 Gossypium raimondii HOM05D007223 ORTHO05D008932 7.3e-36 154.5 115 69.6
Dinv42721 Davidia involucrata HOM05D007223 ORTHO05D008932 9.6e-36 154.1 171 53.2
Dinv43380 Davidia involucrata HOM05D007223 ORTHO05D008932 9.6e-36 154.1 171 53.2
Duzib168G2276 Durio zibethinus HOM05D007223 ORTHO05D008932 9.6e-36 154.1 170 54.1
Prupe.1G085900 Prunus persica HOM05D007223 ORTHO05D008932 9.6e-36 154.1 157 57.3
RcHm_v2.0_Chr4g0402441 Rosa chinensis HOM05D007223 ORTHO05D008932 9.6e-36 154.1 155 56.1
Thecc.09G177700 Theobroma cacao HOM05D007223 ORTHO05D008932 9.6e-36 154.1 149 59.1
Gohir.A08G084300 Gossypium hirsutum HOM05D007223 ORTHO05D008932 1.2e-35 153.7 115 69.6
Atru.chr7.623 Acer truncatum HOM05D007223 ORTHO05D008932 2.8e-35 152.5 116 69.8
AL8G33400 Arabidopsis lyrata HOM05D007223 ORTHO05D008932 2.8e-35 152.5 147 57.1
FAN22G1200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 2.8e-35 152.5 123 65.9
Peaxi162Scf00231g00621 Petunia axillaris HOM05D007223 ORTHO05D008932 2.8e-35 152.5 116 66.4
Sabra06G0129600 Salix brachista HOM05D007223 ORTHO05D008932 2.8e-35 152.5 167 52.1
SalBow6G4081 Salvia bowleyana HOM05D007223 ORTHO05D008932 2.8e-35 152.5 124 67.7
Eucgr.C02329 Eucalyptus grandis HOM05D007223 ORTHO05D008932 3.6e-35 152.1 145 57.2
FAN17G0481 Fragaria x ananassa HOM05D007223 ORTHO05D008932 3.6e-35 152.1 155 56.1
THA.LOC104813522 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 3.6e-35 152.1 160 54.4
Ciclev10010470m.g Citrus clementina HOM05D007223 ORTHO05D008932 4.7e-35 151.8 158 57.0
TAR625G0650 Trochodendron aralioides HOM05D007223 ORTHO05D008932 4.7e-35 151.8 168 54.8
Cpa.g.sc233.11 Carica papaya HOM05D007223 ORTHO05D008932 6.2e-35 151.4 124 63.7
CiPaw.08G036200 Carya illinoinensis HOM05D007223 ORTHO05D008932 8.1e-35 151.0 128 61.7
CsaV3_2G008380 Cucumis sativus L. HOM05D007223 ORTHO05D008932 1.8e-34 149.8 116 62.1
Carub.0008s1794 Capsella rubella HOM05D007223 ORTHO05D008932 2.4e-34 149.4 155 52.9
Cfa013503 Carpinus fangiana HOM05D007223 ORTHO05D008932 2.4e-34 149.4 136 59.6
FAN07G1685 Fragaria x ananassa HOM05D007223 ORTHO05D008932 2.4e-34 149.4 155 54.8
arahy.Tifrunner.gnm1.ann1.1E3WXN Arachis hypogaea HOM05D007223 ORTHO05D008932 3.1e-34 149.1 131 60.3
arahy.Tifrunner.gnm1.ann1.LBMC6N Arachis hypogaea HOM05D007223 ORTHO05D008932 3.1e-34 149.1 125 62.4
Duzib170G0975 Durio zibethinus HOM05D007223 ORTHO05D008932 3.1e-34 149.1 115 67.0
Os04g0653300 Oryza sativa ssp. japonica HOM05D007223 ORTHO05D008932 3.1e-34 149.1 126 59.5
AT5G57420 Arabidopsis thaliana HOM05D007223 ORTHO05D008932 4.0e-34 148.7 147 55.8
Thhalv10015874m.g Eutrema salsugineum HOM05D007223 ORTHO05D008932 5.2e-34 148.3 121 63.6
Sed0023808 Sechium edule HOM05D007223 ORTHO05D008932 5.2e-34 148.3 124 60.5
DCAR_014699 Daucus carota HOM05D007223 ORTHO05D008932 6.9e-34 147.9 123 64.2
FAN12G3200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 6.9e-34 147.9 155 53.5
Nn8g40486 Nelumbo nucifera HOM05D007223 ORTHO05D008932 6.9e-34 147.9 167 49.1
BcaB08g36098 Brassica carinata HOM05D007223 ORTHO05D008932 8.9e-34 147.5 121 62.8
CANSAT11G1503 Cannabis sativa HOM05D007223 ORTHO05D008932 8.9e-34 147.5 113 68.1
CARHR271220 Cardamine hirsuta HOM05D007223 ORTHO05D008932 8.9e-34 147.5 116 64.7
FvH4_4g08200 Fragaria vesca HOM05D007223 ORTHO05D008932 1.2e-33 147.1 155 53.5
Sp6g19140 Schrenkiella parvula HOM05D007223 ORTHO05D008932 1.2e-33 147.1 121 62.8
MBI16_g39833_MAGBIO Magnolia biondii HOM05D007223 ORTHO05D008932 1.5e-33 146.7 160 54.4
BcaC04g19969 Brassica carinata HOM05D007223 ORTHO05D008932 2.0e-33 146.4 121 62.0
Lsat_1_v5_gn_5_85421 Lactuca sativa HOM05D007223 ORTHO05D008932 2.0e-33 146.4 118 62.7
Solyc07g019450.3 Solanum lycopersicum HOM05D007223 ORTHO05D008932 2.6e-33 146.0 118 66.1
MD13G1253600 Malus domestica HOM05D007223 ORTHO05D008932 3.4e-33 145.6 161 53.4
Medtr4g128070 Medicago truncatula HOM05D007223 ORTHO05D008932 3.4e-33 145.6 113 65.5
Psat4g012360 Pisum sativum HOM05D007223 ORTHO05D008932 4.4e-33 145.2 117 63.2
TAR383G1061 Trochodendron aralioides HOM05D007223 ORTHO05D008932 4.4e-33 145.2 116 65.5
AUR62033216 Chenopodium quinoa HOM05D007223 ORTHO05D008932 5.8e-33 144.8 121 62.0
Phvul.003G145600 Phaseolus vulgaris HOM05D007223 ORTHO05D008932 7.6e-33 144.4 161 50.3
THA.LOC104817792 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 7.6e-33 144.4 170 51.8
BraA02t05920Z Brassica rapa HOM05D007223 ORTHO05D008932 1.3e-32 143.7 121 61.2
Migut.J01482 Erythranthe guttata HOM05D007223 ORTHO05D008932 1.3e-32 143.7 146 61.0
A02p08480 Brassica napus HOM05D007223 ORTHO05D008932 1.7e-32 143.3 121 61.2
C02p14240 Brassica napus HOM05D007223 ORTHO05D008932 2.2e-32 142.9 170 48.8
BcaB05g22346 Brassica carinata HOM05D007223 ORTHO05D008932 2.9e-32 142.5 116 63.8
Lalb_Chr13g0300221 Lupinus albus HOM05D007223 ORTHO05D008932 2.9e-32 142.5 129 58.1
BolC2t07548H Brassica oleracea HOM05D007223 ORTHO05D008932 4.9e-32 141.7 170 48.2
HanXRQChr10g0308641 Helianthus annuus HOM05D007223 ORTHO05D008932 4.9e-32 141.7 118 61.0
Lalb_Chr07g0180471 Lupinus albus HOM05D007223 ORTHO05D008932 4.9e-32 141.7 119 62.2
TPR.G5371 Trifolium pratense HOM05D007223 ORTHO05D008932 1.9e-31 139.8 116 63.8
Lj4g0003272 Lotus japonicus HOM05D007223 ORTHO05D008932 2.4e-31 139.4 113 64.6
PSO782G5105 Papaver somniferum HOM05D007223 ORTHO05D008932 4.2e-31 138.7 120 58.3
ATR0580G272 Amborella trichopoda HOM05D007223 ORTHO05D008932 5.4e-31 138.3 122 60.7
ECA234G1236 Erigeron canadensis HOM05D007223 ORTHO05D008932 1.7e-29 133.3 116 59.5
Oeu004200.1 Olea europaea HOM05D007223 ORTHO05D008932 1.9e-28 129.8 136 53.7
COL.COLO4_37700 Corchorus olitorius HOM05D007223 ORTHO05D008932 4.8e-27 125.2 110 61.8
HPP92_017414 Vanilla planifolia HOM05D007223 ORTHO05D008932 2.4e-26 122.9 155 45.2
SEGI_39293 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 2.6e-25 119.4 147 49.7
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 1.7e-24 116.7 124 54.8
PGSC0003DMG400043142 Solanum tuberosum HOM05D007223 ORTHO05D008932 2.2e-24 116.3 89 65.2
Haze_22095 Corylus avellana HOM05D007223 ORTHO05D008932 4.9e-24 115.2 96 60.4
Ca_21226_v3 Cicer arietinum L. HOM05D007223 ORTHO05D008932 8.4e-24 114.4 96 59.4
ClCG11G012160 Citrullus lanatus HOM05D007223 ORTHO05D008932 8.4e-24 114.4 96 59.4
MELO3C004026.2 Cucumis melo HOM05D007223 ORTHO05D008932 1.1e-23 114.0 96 56.2
C09p49290 Brassica napus HOM05D007223 ORTHO05D008932 1.4e-23 113.6 107 56.1
BolC9t57780H Brassica oleracea HOM05D007223 ORTHO05D008932 1.4e-23 113.6 107 56.1
BraA10t43566Z Brassica rapa HOM05D007223 ORTHO05D008932 1.9e-23 113.2 98 59.2
Aa31LG3G13310 Aethionema arabicum HOM05D007223 ORTHO05D008932 3.2e-23 112.5 96 58.3
A10p14870 Brassica napus HOM05D007223 ORTHO05D008932 4.2e-23 112.1 95 60.0
Lj5C7T1 Lonicera japonica HOM05D007223 ORTHO05D008932 7.1e-23 111.3 95 63.2
Lj5C590T0 Lonicera japonica HOM05D007223 ORTHO05D008932 9.3e-23 110.9 95 63.2
VMungo1215G0104 Vigna mungo HOM05D007223 ORTHO05D008932 9.3e-23 110.9 96 58.3
BcaC03g14153 Brassica carinata HOM05D007223 ORTHO05D008932 1.2e-22 110.5 145 44.8
EL10Ac8g18282 Beta vulgaris HOM05D007223 ORTHO05D008932 7.9e-22 107.8 91 57.1
Zm00001eb432400 Zea mays HOM05D007223 ORTHO05D008932 8.1e-19 97.8 123 43.9
Aqoxy7G03081 Aquilegia oxysepala HOM05D007223 ORTHO05D008932 4.5e-17 92.0 54 79.6
Mapoly0013s0010 Marchantia polymorpha HOM05D007223 ORTHO05D008932 5.8e-17 91.7 114 47.4
Nitab4.5_0001972g0010 Nicotiana tabacum HOM05D007223 ORTHO05D008932 9.9e-17 90.9 114 50.0
SEGI_19995 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 2.9e-16 89.4 107 48.6
AagrBONN_evm.TU.Sc2ySwM_117.1187 Anthoceros agrestis HOM05D007223 ORTHO05D008932 1.6e-11 73.6 132 36.4
CBR_g19697 Chara braunii HOM05D000117 ORTHO05D008932 3.1e-10 69.3 105 36.2
CBR_g39692 Chara braunii HOM05D000117 ORTHO05D000070 3.1e-10 69.3 105 38.1
SMO170G0055 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 2.9e-08 62.8 99 41.4
Glyma.20G083900 Glycine max HOM05D007223 ORTHO05D008932 3.8e-08 62.4 160 31.9
CsaV3_3G028380 Cucumis sativus L. HOM05D000117 ORTHO05D000070 4.9e-08 62.0 101 34.7
SMO141G0094 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 4.9e-08 62.0 99 41.4
MELO3C012839.2 Cucumis melo HOM05D000117 ORTHO05D000070 1.9e-07 60.1 101 33.7
TWI32G1086 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 2.5e-07 59.7 107 32.7
Duzib150G1082 Durio zibethinus HOM05D000117 ORTHO05D000070 3.2e-07 59.3 107 29.9
Psat6g062640 Pisum sativum HOM05D000117 ORTHO05D000070 3.2e-07 59.3 104 35.6
PSO782G5332 Papaver somniferum HOM05D000117 ORTHO05D000070 4.2e-07 58.9 101 34.7
Sed0002899 Sechium edule HOM05D000117 ORTHO05D000070 4.2e-07 58.9 132 30.3
TAR381G0337 Trochodendron aralioides HOM05D000117 ORTHO05D000070 4.2e-07 58.9 115 33.0
MBI03_g18679_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D000070 5.5e-07 58.5 115 33.0
PSO170G1783 Papaver somniferum HOM05D000117 ORTHO05D000070 5.5e-07 58.5 103 34.0
Duzib168G1346 Durio zibethinus HOM05D000117 ORTHO05D000070 7.1e-07 58.2 150 27.3
TPR.G6600 Trifolium pratense HOM05D000117 ORTHO05D000070 7.1e-07 58.2 141 27.7
HPP92_004465 Vanilla planifolia HOM05D000117 ORTHO05D000070 9.3e-07 57.8 115 33.0
HPP92_004489 Vanilla planifolia HOM05D000117 ORTHO05D000070 9.3e-07 57.8 115 33.0
Nitab4.5_0006344g0020 Nicotiana tabacum HOM05D000117 ORTHO05D000070 1.2e-06 57.4 99 33.3
TPR.G28140 Trifolium pratense HOM05D000117 ORTHO05D000070 1.2e-06 57.4 104 35.6
Atru.chr7.1283 Acer truncatum HOM05D000117 ORTHO05D000070 1.6e-06 57.0 100 37.0
Lalb_Chr14g0373011 Lupinus albus HOM05D000117 ORTHO05D000070 1.6e-06 57.0 100 31.0
CDE02G2101 Ceratophyllum demersum HOM05D000117 ORTHO05D000070 2.1e-06 56.6 101 30.7
CsaV3_1G045520 Cucumis sativus L. HOM05D000117 ORTHO05D000070 2.1e-06 56.6 129 31.8
Psat5g295600 Pisum sativum HOM05D000117 ORTHO05D000070 2.1e-06 56.6 100 33.0
Potri.006G236200 Populus trichocarpa HOM05D000117 ORTHO05D000070 2.1e-06 56.6 107 31.8
SHI11109 Sapria himalayana HOM05D000117 ORTHO05D000070 2.1e-06 56.6 115 28.7
Solyc03g120390.3 Solanum lycopersicum HOM05D000117 ORTHO05D000070 2.1e-06 56.6 137 29.2
Prupe.1G445000 Prunus persica HOM05D000117 ORTHO05D000070 2.7e-06 56.2 114 30.7
SEGI_10328 Sequoiadendron giganteum HOM05D000117 ORTHO05D000070 2.7e-06 56.2 103 33.0
THA.LOC104808743 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 2.7e-06 56.2 100 33.0
Lalb_Chr21g0309861 Lupinus albus HOM05D000117 ORTHO05D000070 3.5e-06 55.8 135 31.1
Manes.11G033100 Manihot esculenta HOM05D000117 ORTHO05D000070 3.5e-06 55.8 149 28.2
Phvul.002G311500 Phaseolus vulgaris HOM05D000117 ORTHO05D000070 3.5e-06 55.8 133 30.1
THA.LOC104826053 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 3.5e-06 55.8 114 28.9
VMungo0251G2999 Vigna mungo HOM05D000117 ORTHO05D000070 3.5e-06 55.8 101 31.7
Haze_11465 Corylus avellana HOM05D000117 ORTHO05D000070 4.6e-06 55.5 146 27.4
Hma1.2p1_0049F.1_g028320 Hydrangea macrophylla HOM05D000117 ORTHO05D000070 4.6e-06 55.5 102 33.3
Lj3g0015366 Lotus japonicus HOM05D000117 ORTHO05D000070 4.6e-06 55.5 106 31.1
Nitab4.5_0000355g0060 Nicotiana tabacum HOM05D000117 ORTHO05D000070 4.6e-06 55.5 99 32.3
SalBow2G0935 Salvia bowleyana HOM05D000117 ORTHO05D000070 4.6e-06 55.5 99 31.3
Sed0016915 Sechium edule HOM05D000117 ORTHO05D000070 4.6e-06 55.5 101 31.7
CAN.G438.48 Capsicum annuum HOM05D000117 ORTHO05D000070 6.0e-06 55.1 99 34.3
CiPaw.02G145500 Carya illinoinensis HOM05D000117 ORTHO05D000070 6.0e-06 55.1 142 27.5
CDE06G1844 Ceratophyllum demersum HOM05D000117 ORTHO05D028699 6.0e-06 55.1 99 31.3
MBI06_g44455_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D000070 6.0e-06 55.1 95 34.7
Os02g0805100 Oryza sativa ssp. japonica HOM05D000117 ORTHO05D000070 6.0e-06 55.1 99 33.3
Sed0010170 Sechium edule HOM05D000117 ORTHO05D000070 6.0e-06 55.1 101 30.7
Sopen03g039290 Solanum pennellii HOM05D000117 ORTHO05D000070 6.0e-06 55.1 146 29.5
PGSC0003DMG402002635 Solanum tuberosum HOM05D000117 ORTHO05D000070 6.0e-06 55.1 134 29.1
TWI18G0469 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 6.0e-06 55.1 100 32.0
Aa31LG2G21740 Aethionema arabicum HOM05D000117 ORTHO05D000070 7.9e-06 54.7 99 31.3
DCAR_012591 Daucus carota HOM05D000117 ORTHO05D000070 7.9e-06 54.7 99 31.3
Nitab4.5_0000845g0160 Nicotiana tabacum HOM05D000117 ORTHO05D000070 7.9e-06 54.7 102 33.3
Os02g0817600 Oryza sativa ssp. japonica HOM05D000117 ORTHO05D000070 7.9e-06 54.7 100 34.0
Phvul.005G165600 Phaseolus vulgaris HOM05D000117 ORTHO05D000070 7.9e-06 54.7 106 30.2
Sabra02G0148400 Salix brachista HOM05D000117 ORTHO05D000070 7.9e-06 54.7 123 30.9
THA.LOC104804036 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 7.9e-06 54.7 99 29.3
HPP92_011551 Vanilla planifolia HOM05D000117 ORTHO05D000070 7.9e-06 54.7 99 31.3
HPP92_024451 Vanilla planifolia HOM05D000117 ORTHO05D000070 7.9e-06 54.7 138 29.0
GSVIVG01017711001 Vitis vinifera HOM05D000117 ORTHO05D000070 7.9e-06 54.7 123 32.5
Zm00001eb350000 Zea mays HOM05D000117 ORTHO05D000070 7.9e-06 54.7 99 31.3


User provided reference genes

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