Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23211 Striga asiatica HOM05D007561 ORTHO05D007661 4.9e-242 840.9 478 100.0
SGA_v2.0_scaffold66G22349 Striga asiatica HOM05D007561 ORTHO05D007661 1.8e-90 337.4 405 56.5
SalBow6G6384 Salvia bowleyana HOM05D007561 ORTHO05D007661 5.3e-79 299.3 492 46.5
SalBow6G1989 Salvia bowleyana HOM05D007561 ORTHO05D007661 7.0e-79 298.9 492 46.1
Migut.J01597 Erythranthe guttata HOM05D007561 ORTHO05D007661 1.4e-74 284.6 495 44.0
Oeu020265.1 Olea europaea HOM05D007561 ORTHO05D007661 1.4e-74 284.6 499 43.1
MSTRG.19744 Avicennia marina HOM05D007561 ORTHO05D007661 1.3e-72 278.1 564 42.9
MSTRG.6258 Avicennia marina HOM05D007561 ORTHO05D007661 9.1e-71 271.9 566 43.6
Dinv37052 Davidia involucrata HOM05D007561 ORTHO05D007661 6.3e-64 249.2 512 40.4
TAR561G0001 Trochodendron aralioides HOM05D007561 ORTHO05D007661 1.3e-61 241.5 499 39.1
TWI77G0394 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 3.2e-60 236.9 470 43.0
DCAR_009109 Daucus carota HOM05D007561 ORTHO05D007661 6.8e-58 229.2 494 42.1
TWI74G0078 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 9.8e-57 225.3 455 40.9
Potri.005G090000 Populus trichocarpa HOM05D007561 ORTHO05D007661 1.8e-55 221.1 489 38.2
PGSC0003DMG400028120 Solanum tuberosum HOM05D007561 ORTHO05D007661 1.0e-53 215.3 490 38.2
Sabra05G0074100 Salix brachista HOM05D007561 ORTHO05D007661 5.0e-53 213.0 491 39.9
Sopen10g031840 Solanum pennellii HOM05D007561 ORTHO05D007661 5.0e-53 213.0 491 37.5
Nitab4.5_0000613g0170 Nicotiana tabacum HOM05D007561 ORTHO05D007661 8.6e-53 212.2 535 37.2
Solyc10g081340.1 Solanum lycopersicum HOM05D007561 ORTHO05D007661 1.5e-52 211.5 491 37.7
Ciclev10013885m.g Citrus clementina HOM05D007561 ORTHO05D007661 2.5e-52 210.7 475 37.9
CAN.G128.129 Capsicum annuum HOM05D007561 ORTHO05D007661 2.8e-51 207.2 520 34.4
Peaxi162Scf00575g00079 Petunia axillaris HOM05D007561 ORTHO05D007661 4.0e-50 203.4 446 38.1
Potri.007G074056 Populus trichocarpa HOM05D007561 ORTHO05D007661 8.9e-50 202.2 491 39.5
Nitab4.5_0000811g0050 Nicotiana tabacum HOM05D007561 ORTHO05D007661 2.6e-49 200.7 511 38.7
PSO732G0159 Papaver somniferum HOM05D007561 ORTHO05D007661 1.6e-46 191.4 482 38.2
PSO675G2416 Papaver somniferum HOM05D007561 ORTHO05D007661 2.3e-45 187.6 498 36.1
Manes.04G066400 Manihot esculenta HOM05D007561 ORTHO05D007661 3.0e-45 187.2 496 36.3
Lj2A414T29 Lonicera japonica HOM05D007561 ORTHO05D007661 5.0e-45 186.4 469 38.4
Aqoxy2G00670 Aquilegia oxysepala HOM05D007561 ORTHO05D007661 3.6e-43 180.3 496 35.3
Ah.04g149900 Amaranthus hybridus HOM05D007561 ORTHO05D007661 5.8e-41 172.9 504 37.1
RhsimUnG0021900 Rhododendron simsii HOM05D007561 ORTHO05D007661 5.8e-41 172.9 522 36.4
Actinidia18379 Actinidia chinensis HOM05D007561 ORTHO05D007661 4.9e-40 169.9 550 34.7
CiPaw.09G161100 Carya illinoinensis HOM05D007561 ORTHO05D007661 1.4e-39 168.3 531 37.3
AUR62020949 Chenopodium quinoa HOM05D007561 ORTHO05D007661 3.2e-39 167.2 512 35.7
Cpa.g.sc33.185 Carica papaya HOM05D007561 ORTHO05D007661 4.1e-39 166.8 475 35.2
VMungo1383G3023 Vigna mungo HOM05D007561 ORTHO05D007661 6.0e-38 162.9 462 35.5
Phvul.001G109100 Phaseolus vulgaris HOM05D007561 ORTHO05D007661 7.8e-38 162.5 491 36.0
AUR62018475 Chenopodium quinoa HOM05D007561 ORTHO05D007661 3.3e-36 157.1 507 35.3
MELO3C009692.2 Cucumis melo HOM05D007561 ORTHO05D007661 4.3e-36 156.8 508 35.8
Atru.chr8.931 Acer truncatum HOM05D007561 ORTHO05D007661 1.6e-35 154.8 519 35.6
Duzib177G0099 Durio zibethinus HOM05D007561 ORTHO05D007661 1.6e-35 154.8 521 34.2
Glyma.03G118900 Glycine max HOM05D007561 ORTHO05D007661 2.1e-35 154.5 493 34.3
Hma1.2p1_1686F.1_g297500 Hydrangea macrophylla HOM05D007561 ORTHO05D007661 2.1e-35 154.5 421 37.5
CsaV3_3G039500 Cucumis sativus L. HOM05D007561 ORTHO05D007661 2.8e-35 154.1 514 36.0
GSVIVG01029894001 Vitis vinifera HOM05D007561 ORTHO05D007661 2.8e-35 154.1 376 36.4
Gorai.012G026500 Gossypium raimondii HOM05D007561 ORTHO05D007661 3.6e-35 153.7 465 33.3
Sabra07G0062300 Salix brachista HOM05D007561 ORTHO05D007661 3.6e-35 153.7 423 35.5
HPP92_021156 Vanilla planifolia HOM05D007561 ORTHO05D007661 1.1e-34 152.1 435 37.5
Sc13g0000670 Simmondsia chinensis HOM05D007561 ORTHO05D007661 2.3e-34 151.0 420 36.7
Lj1g0025432 Lotus japonicus HOM05D007561 ORTHO05D007661 6.8e-34 149.4 448 34.6
ClCG10G016860 Citrullus lanatus HOM05D007561 ORTHO05D007661 8.9e-34 149.1 506 36.8
Ca_08339_v3 Cicer arietinum L. HOM05D007561 ORTHO05D007661 1.2e-33 148.7 467 34.0
Medtr7g088200 Medicago truncatula HOM05D007561 ORTHO05D007661 2.6e-33 147.5 466 32.2
Sed0024594 Sechium edule HOM05D007561 ORTHO05D007661 3.4e-33 147.1 496 36.9
Glyma.19G123300 Glycine max HOM05D007561 ORTHO05D007661 9.8e-33 145.6 477 34.0
Gohir.A05G393000 Gossypium hirsutum HOM05D007561 ORTHO05D007661 2.2e-32 144.4 394 34.8
Migut.K00204 Erythranthe guttata HOM05D007561 ORTHO05D007661 6.4e-32 142.9 459 40.1
Sed0023829 Sechium edule HOM05D007561 ORTHO05D007661 8.3e-32 142.5 495 32.7
Thecc.05G190500 Theobroma cacao HOM05D007561 ORTHO05D007661 1.4e-31 141.7 514 33.5
PGR042G3351 Punica granatum HOM05D007561 ORTHO05D007661 2.4e-31 141.0 451 39.2
Gohir.D04G022850 Gossypium hirsutum HOM05D007561 ORTHO05D007661 9.2e-31 139.0 396 34.1
ATR0068G026 Amborella trichopoda HOM05D007561 ORTHO05D007661 3.5e-30 137.1 481 32.6
PSO339G6289 Papaver somniferum HOM05D007561 ORTHO05D007661 2.3e-29 134.4 461 32.3
Psat3g083040 Pisum sativum HOM05D007561 ORTHO05D007661 2.3e-29 134.4 484 31.0
FAN07G2764 Fragaria x ananassa HOM05D007561 ORTHO05D007661 1.9e-28 131.3 527 31.7
RcHm_v2.0_Chr3g0495011 Rosa chinensis HOM05D007561 ORTHO05D007661 2.5e-28 131.0 550 28.5
PSO384G3070 Papaver somniferum HOM05D007561 ORTHO05D007661 3.3e-28 130.6 459 32.0
FAN17G1891 Fragaria x ananassa HOM05D007561 ORTHO05D007661 5.6e-28 129.8 551 30.7
FAN12G2197 Fragaria x ananassa HOM05D007561 ORTHO05D007661 2.1e-27 127.9 557 30.9
Gorai.013G132100 Gossypium raimondii HOM05D007561 ORTHO05D007661 2.1e-27 127.9 485 31.5
FAN22G1656 Fragaria x ananassa HOM05D007561 ORTHO05D007661 4.7e-27 126.7 553 30.2
Gohir.D13G117500 Gossypium hirsutum HOM05D007561 ORTHO05D007661 6.2e-27 126.3 481 31.4
Gohir.A13G114700 Gossypium hirsutum HOM05D007561 ORTHO05D007661 1.1e-26 125.6 481 31.8
FvH4_4g10470 Fragaria vesca HOM05D007561 ORTHO05D007661 1.4e-26 125.2 555 30.6
unitig_899.g15656 Utricularia gibba HOM05D007561 ORTHO05D007661 1.4e-26 125.2 360 33.9
PGR042G3883 Punica granatum HOM05D007561 ORTHO05D007661 5.2e-26 123.2 415 33.7
Lalb_Chr22g0358291 Lupinus albus HOM05D007561 ORTHO05D007661 1.2e-25 122.1 502 29.9
FAN12G0994 Fragaria x ananassa HOM05D007561 ORTHO05D007661 1.5e-25 121.7 555 30.5
Eucgr.A02170 Eucalyptus grandis HOM05D007561 ORTHO05D007661 3.9e-21 107.1 538 31.4
MD12G1110900 Malus domestica HOM05D007561 ORTHO05D007661 3.4e-17 94.0 557 27.3
QL02p091854 Quercus lobata HOM05D007561 ORTHO05D007661 2.9e-16 90.9 430 31.2
Thhalv10015710m.g Eutrema salsugineum HOM05D011214 ORTHO05D007661 7.1e-15 86.3 424 30.9
Haze_20355 Corylus avellana HOM05D007561 ORTHO05D007661 1.2e-14 85.5 424 28.8
Prupe.7G023100 Prunus persica HOM05D007561 ORTHO05D007661 7.8e-14 82.8 290 31.7
PGR142G0684 Punica granatum HOM05D007561 ORTHO05D007661 7.8e-14 82.8 391 29.7
COL.COLO4_05647 Corchorus olitorius HOM05D007561 ORTHO05D007661 1.0e-13 82.4 497 29.8
Os01g0264600 Oryza sativa ssp. japonica HOM05D007561 ORTHO05D007661 2.3e-13 81.3 261 39.5
BraA10t45239Z Brassica rapa HOM05D011214 ORTHO05D007661 3.0e-13 80.9 380 30.8
BcaB05g21770 Brassica carinata HOM05D011214 ORTHO05D007661 6.6e-13 79.7 376 28.7
CANSAT78G1013 Cannabis sativa HOM05D007561 ORTHO05D007661 8.7e-13 79.3 499 27.5
BcaC06g32123 Brassica carinata HOM05D011214 ORTHO05D007661 2.5e-12 77.8 393 28.8
A10p31950 Brassica napus HOM05D011214 ORTHO05D007661 2.5e-12 77.8 379 30.3
C02p01830 Brassica napus HOM05D011214 ORTHO05D007661 3.3e-12 77.4 372 29.0
BolC2t06140H Brassica oleracea HOM05D011214 ORTHO05D007661 4.3e-12 77.0 373 29.8
CARHR209070 Cardamine hirsuta HOM05D011214 ORTHO05D007661 4.3e-12 77.0 386 28.0
Sp6g38560 Schrenkiella parvula HOM05D011214 ORTHO05D007661 5.6e-12 76.6 379 29.8
AT5G04190 Arabidopsis thaliana HOM05D011214 ORTHO05D007661 7.3e-12 76.3 386 29.5
SEGI_17426 Sequoiadendron giganteum HOM05D007561 ORTHO05D007661 7.3e-12 76.3 437 27.2
BcaC03g12952 Brassica carinata HOM05D011214 ORTHO05D007661 9.6e-12 75.9 373 29.5
BcaC06g32122 Brassica carinata HOM05D011214 ORTHO05D007661 3.6e-11 73.9 390 27.9
BraA02t04803Z Brassica rapa HOM05D011214 ORTHO05D007661 4.8e-11 73.6 371 26.7
BolC9t60006H Brassica oleracea HOM05D011214 ORTHO05D007661 1.8e-10 71.6 416 27.9
Cfa019892 Carpinus fangiana HOM05D007561 ORTHO05D007661 2.4e-10 71.2 339 28.0
Zm00001eb333260 Zea mays HOM05D007561 ORTHO05D007661 2.4e-10 71.2 264 38.6
C09p72660 Brassica napus HOM05D011214 ORTHO05D007661 3.1e-10 70.9 391 28.9
Carub.0006s0314 Capsella rubella HOM05D011214 ORTHO05D007661 3.1e-10 70.9 378 29.4
AL6G13810 Arabidopsis lyrata HOM05D011214 ORTHO05D007661 2.6e-09 67.8 387 29.2
Hma1.2p1_0795F.1_g218740 Hydrangea macrophylla HOM05D002654 ORTHO05D002430 4.5e-09 67.0 395 26.8
THA.LOC104816415 Tarenaya hassleriana HOM05D011214 ORTHO05D007661 5.8e-09 66.6 437 26.8
SGA_v2.0_scaffold139G35361 Striga asiatica HOM05D007561 ORTHO05D007661 9.9e-09 65.9 60 61.7
Duzib251G0139 Durio zibethinus HOM05D002654 ORTHO05D002430 3.8e-08 63.9 375 27.2
Dinv34160 Davidia involucrata HOM05D002654 ORTHO05D002430 4.9e-08 63.5 390 26.2
Rhsim12G0063400 Rhododendron simsii HOM05D002654 ORTHO05D002430 4.9e-08 63.5 368 27.7
MBI02_g39064_MAGBIO Magnolia biondii HOM05D002654 ORTHO05D002430 1.1e-07 62.4 376 26.1
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.4e-07 62.0 122 33.6
Gohir.A03G098250 Gossypium hirsutum HOM05D002654 ORTHO05D002430 1.9e-07 61.6 399 26.1
Gohir.A12G105550 Gossypium hirsutum HOM05D002654 ORTHO05D002430 1.9e-07 61.6 399 26.1
TPR.G23681 Trifolium pratense HOM05D007561 ORTHO05D007661 2.4e-07 61.2 304 27.0
VMungo0464G1428 Vigna mungo HOM05D025134 ORTHO05D020753 3.2e-07 60.8 248 29.4
Gorai.005G141100 Gossypium raimondii HOM05D002654 ORTHO05D002430 4.2e-07 60.5 400 25.8
CiPaw.05G136200 Carya illinoinensis HOM05D002654 ORTHO05D002430 7.1e-07 59.7 408 24.3
Gohir.D02G125400 Gossypium hirsutum HOM05D002654 ORTHO05D002430 7.1e-07 59.7 400 26.0
CDE04G0982 Ceratophyllum demersum HOM05D007561 ORTHO05D007661 9.3e-07 59.3 150 32.0
MBI05_g08278_MAGBIO Magnolia biondii HOM05D002654 ORTHO05D002430 9.3e-07 59.3 388 26.8
MBI14_g08053_MAGBIO Magnolia biondii HOM05D007561 ORTHO05D007661 9.3e-07 59.3 57 59.6
Potri.015G062600 Populus trichocarpa HOM05D002654 ORTHO05D002430 9.3e-07 59.3 372 24.7
ECA234G4854 Erigeron canadensis HOM05D000087 ORTHO05D000439 1.2e-06 58.9 398 24.6
MBI15_g01650_MAGBIO Magnolia biondii HOM05D007561 ORTHO05D007661 1.2e-06 58.9 55 60.0
vmacro01254 Vaccinium macrocarpon HOM05D002654 ORTHO05D002430 1.2e-06 58.9 472 25.2
CSS0017824 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 1.6e-06 58.5 238 27.7
CSS0046015 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 1.6e-06 58.5 238 27.7
Ciclev10020017m.g Citrus clementina HOM05D002654 ORTHO05D002430 1.6e-06 58.5 387 24.0
SalBow8G1826 Salvia bowleyana HOM05D017717 ORTHO05D007661 2.7e-06 57.8 79 51.9
Thecc.02G347200 Theobroma cacao HOM05D002654 ORTHO05D002430 3.5e-06 57.4 372 26.9


User provided reference genes

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