Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 3.2e-59 231.9 146 100.0
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 4.1e-22 108.6 124 64.5
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 1.6e-18 96.7 118 58.5
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 4.7e-18 95.1 118 58.5
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 6.1e-18 94.7 98 57.1
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 1.4e-17 93.6 118 56.8
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 3.0e-17 92.4 118 55.1
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 2.0e-16 89.7 118 57.6
MSTRG.6293 Avicennia marina HOM05D005060 ORTHO05D005975 1.3e-15 87.0 122 63.9
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 1.7e-15 86.7 118 53.4
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 4.8e-15 85.1 124 52.4
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 8.2e-15 84.3 147 42.2
SGA_v2.0_scaffold104G30067 Striga asiatica HOM05D005060 ORTHO05D005975 1.1e-14 84.0 81 65.4
Oeu023007.1 Olea europaea HOM05D005060 ORTHO05D005975 1.8e-14 83.2 106 67.9
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 3.1e-14 82.4 107 50.5
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 7.0e-14 81.3 128 57.0
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 9.1e-14 80.9 102 67.6
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 2.6e-13 79.3 103 61.2
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 4.5e-13 78.6 108 43.5
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 5.9e-13 78.2 106 54.7
Nitab4.5_0001270g0130 Nicotiana tabacum HOM05D005060 ORTHO05D005975 5.9e-13 78.2 116 62.9
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 5.9e-13 78.2 138 48.6
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.0e-12 77.4 102 53.9
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.0e-12 77.4 105 60.0
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 1.0e-12 77.4 103 65.0
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 2.2e-12 76.3 108 42.6
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 2.2e-12 76.3 104 47.1
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 5.0e-12 75.1 100 55.0
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 6.5e-12 74.7 122 53.3
CAN.G959.26 Capsicum annuum HOM05D005060 ORTHO05D005975 8.5e-12 74.3 119 58.8
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 8.5e-12 74.3 107 43.0
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 1.1e-11 73.9 107 55.1
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 1.1e-11 73.9 103 63.1
PGSC0003DMG400007184 Solanum tuberosum HOM05D005060 ORTHO05D005975 1.9e-11 73.2 122 57.4
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 3.2e-11 72.4 120 46.7
Cc06_g22810 Coffea canephora HOM05D005060 ORTHO05D005975 4.2e-11 72.0 102 61.8
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 4.2e-11 72.0 103 48.5
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 7.2e-11 71.2 100 53.0
EL10Ac3g07347 Beta vulgaris HOM05D005060 ORTHO05D005975 1.2e-10 70.5 101 57.4
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 1.2e-10 70.5 118 57.6
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 1.2e-10 70.5 123 42.3
Sopen10g028770 Solanum pennellii HOM05D005060 ORTHO05D005975 1.6e-10 70.1 130 56.2
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 2.7e-10 69.3 94 58.5
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 2.7e-10 69.3 98 63.3
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 2.7e-10 69.3 101 43.6
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 3.6e-10 68.9 105 61.0
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 4.7e-10 68.6 94 59.6
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 4.7e-10 68.6 102 51.0
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 4.7e-10 68.6 102 51.0
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 4.7e-10 68.6 102 51.0
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 4.7e-10 68.6 103 52.4
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 4.7e-10 68.6 103 50.5
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 8.0e-10 67.8 93 67.7
Aqoxy1G00045 Aquilegia oxysepala HOM05D005060 ORTHO05D005975 1.0e-09 67.4 137 54.7
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 1.0e-09 67.4 101 50.5
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 1.4e-09 67.0 126 55.6
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 1.4e-09 67.0 126 55.6
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 1.4e-09 67.0 101 49.5
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 1.8e-09 66.6 123 53.7
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 1.8e-09 66.6 102 41.2
Solyc10g077090.2 Solanum lycopersicum HOM05D005060 ORTHO05D005975 2.3e-09 66.2 130 56.2
Actinidia24546 Actinidia chinensis HOM05D005060 ORTHO05D005975 4.0e-09 65.5 99 61.6
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 6.7e-09 64.7 87 55.2
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 8.8e-09 64.3 89 60.7
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.2e-08 63.9 97 49.5
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.2e-08 63.9 97 49.5
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 1.2e-08 63.9 97 49.5
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 1.2e-08 63.9 97 43.3
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 2.6e-08 62.8 108 46.3
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 2.6e-08 62.8 109 50.5
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 2.6e-08 62.8 92 47.8
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 3.3e-08 62.4 145 44.8
CSS0016899 Camellia sinensis var. sinensis HOM05D005060 ORTHO05D005975 9.7e-08 60.8 89 62.9
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 1.3e-07 60.5 89 56.2
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 1.7e-07 60.1 101 44.6
Duzib128G1851 Durio zibethinus HOM05D005060 ORTHO05D005975 2.2e-07 59.7 98 61.2
ATR0787G086 Amborella trichopoda HOM05D005060 ORTHO05D005975 2.8e-07 59.3 102 64.7
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 2.8e-07 59.3 97 49.5
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 3.7e-07 58.9 91 64.8
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 4.8e-07 58.5 96 59.4
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 4.8e-07 58.5 102 42.2
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 8.2e-07 57.8 143 41.3
Hund24512 Selenicereus undatus HOM05D005060 ORTHO05D005975 8.2e-07 57.8 100 56.0
CANSAT78G0005 Cannabis sativa HOM05D005060 ORTHO05D005975 1.1e-06 57.4 140 48.6
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 1.1e-06 57.4 108 36.1
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 1.4e-06 57.0 106 39.6
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 1.4e-06 57.0 121 53.7
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 1.4e-06 57.0 104 37.5
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.8e-06 56.6 81 45.7
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 2.4e-06 56.2 67 58.2
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 2.4e-06 56.2 123 52.0
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 4.1e-06 55.5 57 61.4
CDE02G1443 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 5.3e-06 55.1 62 77.4
Ciclev10013042m.g Citrus clementina HOM05D005060 ORTHO05D005975 7.0e-06 54.7 92 60.9
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 7.0e-06 54.7 122 45.1
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 7.0e-06 54.7 107 37.4
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 9.1e-06 54.3 57 64.9


User provided reference genes

Program Settings