Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 3.2e-103 378.6 219 100.0
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 7.4e-60 234.6 231 68.8
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.3e-43 180.6 234 45.3
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 7.9e-38 161.4 227 42.7
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-36 157.5 224 43.8
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 2.4e-34 149.8 235 42.6
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 9.1e-34 147.9 241 40.2
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.2e-33 147.5 217 42.9
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.7e-32 143.7 229 41.0
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 2.5e-31 139.8 241 41.1
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.2e-30 137.5 228 39.5
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 2.7e-30 136.3 229 39.3
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 8.8e-29 131.3 224 39.3
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 1.2e-28 131.0 241 38.6
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.3e-27 127.5 243 38.7
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.3e-27 127.5 241 39.0
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 2.4e-26 123.2 243 37.0
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 1.2e-25 120.9 239 39.7
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 3.5e-25 119.4 221 38.0
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 5.9e-25 118.6 236 38.1
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 7.7e-25 118.2 224 42.0
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.0e-24 117.9 233 38.2
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 1.0e-24 117.9 240 36.2
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 1.3e-24 117.5 221 37.6
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 2.2e-24 116.7 226 37.2
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.2e-24 116.7 250 36.0
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.9e-24 116.3 251 35.1
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 6.5e-24 115.2 232 37.5
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 6.5e-24 115.2 230 41.7
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 1.5e-23 114.0 236 36.0
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 1.5e-23 114.0 266 34.2
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 1.5e-23 114.0 228 36.4
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 1.9e-23 113.6 245 41.6
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 7.2e-23 111.7 262 35.5
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 9.4e-23 111.3 228 35.1
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 1.6e-22 110.5 227 35.7
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 2.1e-22 110.2 261 33.3
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 2.7e-22 109.8 240 34.2
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 3.6e-22 109.4 250 34.0
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 3.6e-22 109.4 244 36.9
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 4.7e-22 109.0 228 37.7
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 4.7e-22 109.0 252 36.1
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 4.7e-22 109.0 238 36.1
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 6.1e-22 108.6 229 35.8
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 6.1e-22 108.6 251 35.1
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 2.3e-21 106.7 244 34.0
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 2.3e-21 106.7 234 36.8
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 4.0e-21 105.9 232 34.5
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 6.8e-21 105.1 242 35.1
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 8.8e-21 104.8 244 36.9
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 1.2e-20 104.4 252 33.7
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.0e-20 103.6 232 34.5
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 4.4e-20 102.4 234 35.9
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 4.4e-20 102.4 228 35.1
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 5.7e-20 102.1 242 35.5
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 7.5e-20 101.7 247 35.6
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 7.5e-20 101.7 248 33.9
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 7.5e-20 101.7 265 32.5
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 1.3e-19 100.9 235 34.9
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.3e-19 100.9 271 32.5
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 1.7e-19 100.5 234 35.5
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 1.7e-19 100.5 234 35.5
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.7e-19 100.5 251 33.9
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.7e-19 100.5 235 35.7
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.7e-19 99.4 232 33.2
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 4.8e-19 99.0 266 31.2
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 6.3e-19 98.6 243 32.5
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 1.8e-18 97.1 223 34.1
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.8e-18 97.1 250 32.8
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 2.4e-18 96.7 234 34.2
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 2.4e-18 96.7 234 34.2
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 2.4e-18 96.7 234 32.5
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 2.4e-18 96.7 251 33.1
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 4.1e-18 95.9 259 32.8
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.2e-17 94.4 229 28.8
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.2e-17 94.4 252 33.3
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 4.5e-17 92.4 221 36.7
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 5.9e-17 92.0 246 33.3
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.0e-16 91.3 228 34.2
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 1.0e-16 91.3 243 33.7
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 1.3e-16 90.9 265 29.1
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 1.3e-16 90.9 245 31.8
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 1.7e-16 90.5 265 32.5
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 3.8e-16 89.4 230 31.3
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 5.0e-16 89.0 245 29.4
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 8.5e-16 88.2 236 30.9
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 8.5e-16 88.2 229 34.5
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 1.1e-15 87.8 246 32.1
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 1.1e-15 87.8 246 32.1
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.1e-15 87.8 186 36.6
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.5e-15 87.4 250 30.8
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.5e-15 87.4 237 28.7
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 2.5e-15 86.7 242 31.8
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 2.5e-15 86.7 258 29.8
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 3.2e-15 86.3 238 28.6
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 2.1e-14 83.6 249 30.9
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 2.1e-14 83.6 249 30.9
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 2.1e-14 83.6 249 30.9
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 2.1e-14 83.6 261 29.1
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.1e-14 83.6 219 32.9
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 2.8e-14 83.2 253 32.0
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.8e-14 83.2 223 33.6
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 2.8e-14 83.2 243 29.6
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 3.6e-14 82.8 130 41.5
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 3.6e-14 82.8 118 43.2
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 8.0e-14 81.6 223 33.2
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.0e-13 81.3 223 33.2
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 1.4e-13 80.9 239 30.1
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 2.3e-13 80.1 125 42.4
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 3.0e-13 79.7 237 30.4
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 3.0e-13 79.7 237 30.4
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 3.0e-13 79.7 249 30.9
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.2e-12 77.8 211 30.3
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.2e-12 77.8 249 29.3
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.5e-12 77.4 217 30.0
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 2.6e-12 76.6 135 39.3
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.6e-12 76.6 224 28.1
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.4e-12 76.3 180 34.4
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 5.7e-12 75.5 242 28.1
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 7.5e-12 75.1 240 28.3
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.3e-11 74.3 129 39.5
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.7e-11 73.9 248 28.2
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.7e-11 73.9 109 49.5
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 2.2e-11 73.6 242 31.0
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 4.9e-11 72.4 119 42.0
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.9e-11 72.4 235 31.9
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 4.9e-11 72.4 230 31.7
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.9e-11 72.4 248 28.6
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 6.3e-11 72.0 264 27.3
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.1e-10 71.2 256 28.9
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.4e-10 70.9 230 30.4
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.8e-10 70.5 287 26.1
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 3.1e-10 69.7 226 31.4
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 7.0e-10 68.6 136 38.2
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 9.2e-10 68.2 108 40.7
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.2e-09 67.8 126 39.7
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 1.6e-09 67.4 121 41.3
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 2.0e-09 67.0 117 47.9
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.5e-09 65.9 106 42.5
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 2.3e-08 63.5 234 32.9
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.9e-08 63.2 219 27.9
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 2.9e-08 63.2 220 30.9
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.8e-08 62.8 106 41.5
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 3.3e-07 59.7 97 38.1
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.2e-06 57.8 103 41.7
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 2.8e-06 56.6 85 40.0


User provided reference genes

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