Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 1.5e-155 552.7 276 100.0
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 2.8e-112 409.1 268 78.7
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 3.6e-112 408.7 272 77.9
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 4.4e-110 401.7 268 76.5
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 1.3e-109 400.2 268 76.1
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.7e-109 399.8 268 76.5
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 2.9e-109 399.1 268 75.7
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.7e-109 398.7 270 75.9
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 5.4e-108 394.8 269 74.3
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.2e-107 393.7 270 76.3
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.2e-107 393.7 272 73.9
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 2.7e-107 392.5 273 75.1
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 4.6e-107 391.7 268 74.6
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 6.0e-107 391.3 268 74.6
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 7.8e-107 391.0 270 73.3
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.0e-106 390.6 272 73.2
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.0e-106 390.6 272 73.5
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.7e-106 389.8 272 73.9
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.7e-106 389.8 269 75.1
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 3.9e-106 388.7 271 74.9
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 3.9e-106 388.7 272 73.9
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 5.0e-106 388.3 272 75.4
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 6.6e-106 387.9 272 72.8
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 8.6e-106 387.5 296 70.3
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.1e-105 387.1 268 74.3
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 1.1e-105 387.1 268 73.9
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 3.3e-105 385.6 268 73.9
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 4.3e-105 385.2 268 72.4
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 7.3e-105 384.4 268 73.9
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 7.3e-105 384.4 268 73.1
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 7.3e-105 384.4 270 73.0
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 9.5e-105 384.0 273 72.5
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 1.2e-104 383.6 271 74.9
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.2e-104 383.6 271 73.8
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 1.2e-104 383.6 270 73.3
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 1.6e-104 383.3 268 74.6
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.1e-104 382.9 268 73.5
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 2.8e-104 382.5 270 72.6
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.6e-104 382.1 270 74.8
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 3.6e-104 382.1 268 73.9
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 4.7e-104 381.7 273 73.6
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 6.2e-104 381.3 270 72.2
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.4e-103 380.2 268 73.9
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 1.4e-103 380.2 268 72.8
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 1.8e-103 379.8 280 73.2
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.8e-103 379.8 319 66.5
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.8e-103 379.8 319 66.5
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 2.3e-103 379.4 268 73.5
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 3.1e-103 379.0 268 73.5
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 4.0e-103 378.6 271 72.7
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 4.0e-103 378.6 268 72.8
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 4.0e-103 378.6 269 72.5
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 6.8e-103 377.9 268 73.1
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 6.8e-103 377.9 268 72.4
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 6.8e-103 377.9 268 72.8
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.2e-102 377.1 268 72.0
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 1.5e-102 376.7 268 73.9
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.5e-102 376.7 268 71.6
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 2.6e-102 375.9 268 72.4
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.4e-102 375.2 268 71.6
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 5.8e-102 374.8 268 70.9
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 5.8e-102 374.8 269 72.5
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 5.8e-102 374.8 269 71.7
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 7.5e-102 374.4 268 73.9
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 7.5e-102 374.4 268 70.9
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 9.8e-102 374.0 268 71.3
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 2.9e-101 372.5 269 69.9
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 4.9e-101 371.7 268 70.9
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 4.9e-101 371.7 272 70.2
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 6.4e-101 371.3 268 71.3
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.4e-100 370.2 272 72.1
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 1.4e-100 370.2 268 70.1
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.9e-100 369.8 301 66.1
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.4e-100 369.4 268 70.9
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 4.1e-100 368.6 268 69.8
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 9.2e-100 367.5 268 70.5
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.2e-99 367.1 324 62.3
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.0e-98 364.0 267 71.5
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 6.6e-98 361.3 272 71.3
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 4.3e-97 358.6 280 67.5
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 6.8e-95 351.3 316 62.7
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.7e-93 346.7 287 64.8
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.7e-93 346.7 201 85.1
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 3.7e-93 345.5 204 84.8
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 6.4e-93 344.7 268 66.8
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 1.6e-91 340.1 236 73.7
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 3.0e-90 335.9 221 77.4
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 6.6e-90 334.7 198 85.4
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.1e-89 334.0 315 60.0
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.5e-89 333.6 268 64.9
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 3.6e-88 328.9 292 61.6
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 4.7e-88 328.6 306 59.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 1.8e-87 326.6 200 82.5
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 5.8e-86 321.6 222 73.9
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 1.4e-84 317.0 201 79.1
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 2.4e-84 316.2 285 62.1
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 1.3e-82 310.5 274 60.9
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 2.0e-78 296.6 271 58.3
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 2.9e-77 292.7 269 56.1
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.9e-73 280.0 170 80.6
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 3.6e-72 275.8 271 57.6
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 2.2e-69 266.5 272 51.8
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.4e-69 264.6 150 90.0
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 1.5e-65 253.8 152 82.2
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.6e-64 250.4 148 81.8
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 2.4e-63 246.5 268 54.5
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 2.4e-63 246.5 281 48.4
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 7.6e-62 241.5 149 81.9
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.9e-60 236.9 165 74.5
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 5.8e-54 215.3 165 67.9
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 3.0e-50 203.0 277 46.2
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.7e-49 198.7 120 82.5
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 3.7e-48 196.1 153 65.4
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.4e-47 193.4 198 57.1
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 6.9e-47 191.8 150 68.0
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 7.7e-46 188.3 123 74.0
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 1.1e-44 184.5 229 46.7
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.5e-41 174.1 162 62.3
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 4.3e-41 172.6 160 60.0
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 4.3e-41 172.6 160 60.0
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 4.1e-39 166.0 249 38.2
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 4.5e-38 162.5 156 57.7
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 7.7e-38 161.8 173 59.0
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 8.2e-32 141.7 122 63.9
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 3.6e-27 126.3 92 69.6
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 7.4e-25 118.6 78 76.9
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 8.2e-24 115.2 112 59.8
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 3.0e-18 96.7 71 66.2
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 4.1e-15 86.3 95 55.8
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 6.5e-13 79.0 57 68.4
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 6.8e-10 68.9 36 86.1
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 1.2e-09 68.2 147 33.3
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 5.7e-09 65.9 41 73.2
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 1.8e-07 60.8 38 76.3


User provided reference genes

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