Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 7.0e-159 563.9 289 100.0
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 9.5e-132 473.8 294 82.7
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 1.0e-125 453.8 284 82.7
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 2.1e-118 429.5 294 74.8
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 1.0e-117 427.2 294 76.9
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 2.3e-117 426.0 294 75.5
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 5.1e-117 424.9 294 74.1
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.6e-115 419.9 291 73.2
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 1.6e-115 419.9 295 72.9
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 2.8e-115 419.1 295 72.2
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 3.6e-115 418.7 294 73.1
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 3.6e-115 418.7 294 74.5
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.1e-114 417.2 295 72.9
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.1e-114 417.2 295 72.9
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 3.1e-114 415.6 295 72.9
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 4.0e-114 415.2 294 70.7
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.0e-113 412.9 294 70.7
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 4.5e-113 411.8 295 72.5
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 4.5e-113 411.8 295 72.5
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 5.8e-113 411.4 294 71.1
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 5.8e-113 411.4 295 70.5
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 1.3e-112 410.2 294 70.7
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.7e-112 409.8 294 72.1
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 2.2e-112 409.5 291 70.4
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 2.2e-112 409.5 295 71.2
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.8e-112 408.7 294 71.1
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.9e-111 406.4 295 70.8
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 2.4e-111 406.0 295 71.2
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 3.2e-111 405.6 294 70.4
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 3.2e-111 405.6 297 69.0
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 4.2e-111 405.2 293 70.3
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 5.4e-111 404.8 290 72.8
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 7.1e-111 404.4 295 69.2
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 9.3e-111 404.1 294 69.7
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 2.1e-110 402.9 292 71.6
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 2.1e-110 402.9 294 70.7
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 2.7e-110 402.5 294 70.1
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 7.9e-110 401.0 293 70.0
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 7.9e-110 401.0 291 71.8
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.0e-109 400.6 295 70.8
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.0e-109 400.6 293 71.0
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.0e-109 400.6 295 68.5
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.3e-109 400.2 295 70.8
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 1.3e-109 400.2 291 70.8
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 1.3e-109 400.2 295 70.8
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 1.8e-109 399.8 293 69.6
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.8e-109 399.8 295 67.1
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 3.9e-109 398.7 294 69.4
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 8.7e-109 397.5 296 69.6
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 8.7e-109 397.5 294 68.4
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 8.7e-109 397.5 292 71.2
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.1e-108 397.1 294 69.0
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 1.5e-108 396.7 295 69.8
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 2.5e-108 396.0 294 68.0
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 3.3e-108 395.6 294 68.0
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 9.6e-108 394.0 295 69.8
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 9.6e-108 394.0 351 61.3
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 2.1e-107 392.9 295 68.1
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 2.8e-107 392.5 294 68.4
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 3.7e-107 392.1 294 68.4
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 3.7e-107 392.1 294 68.4
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 4.8e-107 391.7 294 68.4
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 4.8e-107 391.7 294 68.0
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.2e-107 391.3 297 69.4
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 8.1e-107 391.0 294 68.0
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.8e-106 389.8 292 69.5
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.4e-106 389.4 295 68.8
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 3.1e-106 389.0 294 68.0
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 4.0e-106 388.7 291 68.7
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.9e-106 387.9 321 64.5
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 6.9e-106 387.9 317 64.7
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 9.0e-106 387.5 321 65.1
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.5e-105 386.7 293 68.6
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.6e-105 386.0 294 66.3
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 7.6e-105 384.4 294 66.3
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.7e-104 383.3 294 67.7
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 2.2e-104 382.9 306 65.7
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 2.2e-104 382.9 306 65.7
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.1e-103 380.6 294 67.3
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 1.4e-103 380.2 324 61.7
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 1.4e-103 380.2 328 62.5
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 4.6e-102 375.2 306 64.7
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 1.0e-101 374.0 329 63.2
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 6.7e-101 371.3 284 66.9
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 6.7e-101 371.3 297 65.3
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 4.3e-100 368.6 288 66.7
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 9.6e-100 367.5 290 66.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 6.2e-99 364.8 291 64.9
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 4.0e-98 362.1 295 66.4
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 6.9e-98 361.3 284 66.5
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 1.5e-97 360.1 305 63.0
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 2.0e-97 359.8 241 73.4
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 5.8e-97 358.2 292 63.7
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.7e-96 356.7 284 64.4
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.7e-96 356.7 272 66.9
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 2.2e-96 356.3 291 65.6
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 4.9e-96 355.1 287 64.1
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.1e-95 354.0 291 63.6
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.2e-95 352.4 287 63.1
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 6.0e-94 348.2 287 63.4
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.0e-93 347.4 285 66.0
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 3.9e-93 345.5 241 69.7
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 5.1e-93 345.1 310 59.7
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.9e-92 343.2 296 61.8
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.9e-92 343.2 295 64.1
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 3.3e-92 342.4 296 60.5
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 7.4e-92 341.3 332 57.5
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 7.4e-92 341.3 297 59.6
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 1.3e-91 340.5 283 64.7
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.1e-90 337.4 292 61.3
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.2e-89 334.0 294 59.2
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 4.5e-89 332.0 280 62.9
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 2.9e-88 329.3 239 69.5
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 8.5e-88 327.8 240 70.0
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 1.9e-87 326.6 301 59.5
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 2.0e-81 306.6 205 77.1
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 2.9e-80 302.8 306 53.6
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.1e-79 300.8 294 58.2
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 1.6e-78 297.0 294 55.1
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.1e-78 296.6 294 57.1
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 3.0e-77 292.7 209 70.3
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.5e-76 290.4 252 60.3
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.3e-75 287.3 294 57.5
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 1.3e-75 287.3 327 53.5
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 2.2e-75 286.6 312 52.6
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 4.8e-75 285.4 294 56.1
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 3.1e-74 282.7 272 60.3
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 5.3e-74 282.0 296 51.4
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 1.9e-71 273.5 206 72.3
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 2.1e-70 270.0 206 68.0
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.0e-69 267.7 217 67.3
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 3.0e-69 266.2 207 67.6
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 3.0e-69 266.2 244 56.6
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 6.7e-69 265.0 273 53.1
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 4.1e-66 255.8 208 63.9
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 7.0e-66 255.0 359 44.0
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.6e-65 253.8 226 55.8
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 4.2e-63 245.7 286 52.4
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 7.0e-58 228.4 177 68.9
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.6e-57 227.3 288 47.2
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 5.0e-56 222.2 188 58.5
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.2e-54 217.6 322 38.2
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 2.3e-53 213.4 333 38.4
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 2.8e-46 189.9 125 74.4
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 9.8e-44 181.4 330 36.4
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 5.6e-39 165.6 90 87.8
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 3.6e-30 136.3 108 63.9
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 3.1e-29 133.3 312 31.1
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 7.5e-28 128.6 79 72.2
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 4.1e-18 96.3 130 45.4
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 7.8e-17 92.0 149 41.6
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 3.0e-16 90.1 60 71.7
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 3.0e-16 90.1 82 59.8
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.9e-15 87.4 101 52.5
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.2e-14 82.4 142 42.3
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.1e-13 81.6 326 25.8
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 2.9e-11 73.6 54 74.1
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.9e-07 60.8 42 61.9
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 9.6e-07 58.5 38 63.2


User provided reference genes

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