Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 3.5e-247 857.8 428 100.0
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 3.5e-183 645.2 426 73.9
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.3e-182 643.3 426 73.7
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 1.8e-182 642.9 418 76.8
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 1.5e-173 613.2 409 73.3
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 3.1e-171 605.5 396 75.0
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 1.7e-169 599.7 416 72.4
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 4.7e-167 591.7 398 71.6
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.4e-166 590.1 398 71.9
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 9.7e-165 583.9 401 71.1
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 3.7e-164 582.0 403 71.0
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.4e-163 580.1 415 69.9
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 3.1e-163 578.9 408 70.3
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 4.1e-163 578.6 426 67.8
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 9.1e-163 577.4 400 70.8
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 5.0e-161 571.6 395 70.4
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.9e-160 569.7 391 69.8
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 7.2e-160 567.8 399 69.4
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 9.4e-160 567.4 399 69.4
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 8.0e-159 564.3 398 67.8
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 1.0e-158 563.9 395 69.1
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.0e-158 563.9 415 68.7
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 1.8e-158 563.1 405 69.6
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 3.0e-158 562.4 406 69.0
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 3.9e-158 562.0 408 67.9
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 3.9e-158 562.0 395 68.9
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 6.7e-158 561.2 399 68.7
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 8.8e-158 560.8 402 68.7
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 2.0e-157 559.7 408 67.4
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 4.4e-157 558.5 406 68.0
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 3.7e-156 555.4 412 66.5
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 6.3e-156 554.7 430 65.3
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 8.2e-156 554.3 395 68.1
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 1.4e-155 553.5 401 68.3
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 1.8e-155 553.1 414 66.9
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 1.8e-155 553.1 416 65.6
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 2.4e-155 552.7 408 66.7
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 2.4e-155 552.7 397 68.8
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 4.1e-155 552.0 397 68.3
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 4.1e-155 552.0 396 67.7
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 5.3e-155 551.6 397 68.3
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 7.0e-155 551.2 400 68.0
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 9.1e-155 550.8 397 68.0
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 1.2e-154 550.4 402 67.7
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 4.5e-154 548.5 415 66.0
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 5.9e-154 548.1 404 66.3
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 2.2e-153 546.2 396 67.9
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 2.9e-153 545.8 400 66.5
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 2.9e-153 545.8 399 68.4
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 2.9e-153 545.8 393 67.7
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 2.9e-153 545.8 392 67.3
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 3.8e-153 545.4 417 64.7
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 6.5e-153 544.7 396 65.9
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 6.5e-153 544.7 439 64.0
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 8.5e-153 544.3 396 66.9
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.5e-152 543.5 416 64.4
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 3.2e-152 542.3 399 68.4
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 7.2e-152 541.2 399 67.7
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 9.4e-152 540.8 416 64.7
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.6e-151 540.0 399 67.4
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 1.0e-150 537.3 397 67.5
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 8.8e-150 534.3 402 66.4
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 9.7e-149 530.8 410 64.9
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 9.7e-149 530.8 398 67.1
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 1.3e-148 530.4 408 64.7
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 4.8e-148 528.5 399 64.7
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 4.8e-148 528.5 455 61.1
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 8.2e-148 527.7 436 61.9
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 1.1e-147 527.3 430 60.5
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 4.1e-147 525.4 422 64.0
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 7.0e-147 524.6 393 65.6
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 7.0e-147 524.6 393 65.6
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.6e-146 523.5 402 64.4
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 2.0e-146 523.1 393 65.1
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 1.0e-145 520.8 399 64.9
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.0e-145 520.8 409 63.3
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 1.3e-145 520.4 430 61.9
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 2.9e-145 519.2 411 62.8
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 5.0e-145 518.5 432 60.2
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.9e-144 516.5 417 63.8
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 4.4e-141 505.4 361 68.4
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 9.5e-136 487.6 383 63.7
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 1.8e-134 483.4 393 61.6
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.3e-134 483.0 333 69.4
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.5e-133 480.3 401 61.8
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 1.6e-130 470.3 439 56.0
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 1.3e-129 467.2 334 68.6
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 3.3e-128 462.6 363 64.5
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.2e-125 454.1 330 65.2
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 1.3e-124 450.7 394 58.6
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.9e-120 436.8 406 53.9
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 1.1e-118 431.0 318 68.2
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 1.9e-115 420.2 305 68.2
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 9.2e-115 417.9 322 64.3
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 8.6e-113 411.4 392 53.3
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.6e-111 406.0 326 63.5
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 1.4e-110 404.1 284 69.0
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 5.2e-110 402.1 390 51.8
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 7.3e-104 381.7 307 61.9
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.4e-102 377.5 413 50.1
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 5.8e-101 372.1 317 59.0
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 5.8e-101 372.1 289 62.6
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 6.4e-100 368.6 281 63.3
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 6.4e-100 368.6 281 63.3
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 3.1e-86 323.2 459 43.1
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 5.3e-86 322.4 388 47.9
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 1.4e-83 314.3 215 68.4
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.9e-83 313.9 235 63.0
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.4e-83 313.5 241 61.4
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.7e-82 310.1 242 63.6
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.7e-74 283.5 189 69.3
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 3.3e-72 276.6 354 46.3
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 2.1e-71 273.9 189 74.6
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 7.9e-58 228.8 433 37.9
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 4.8e-55 219.5 149 73.2
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 5.1e-49 199.5 165 63.0
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 8.8e-49 198.7 251 45.4
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 4.4e-48 196.4 158 65.2
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 1.4e-46 191.4 167 61.1
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.2e-44 184.1 148 60.8
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 1.1e-40 171.8 440 32.3
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.1e-40 171.8 122 71.3
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 2.0e-40 171.0 435 31.5
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 7.2e-35 152.5 439 31.4
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 2.7e-34 150.6 435 28.5
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.0e-33 148.7 427 29.5
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 9.1e-30 135.6 91 69.2
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 8.0e-26 122.5 74 71.6
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 2.6e-24 117.5 86 64.0
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 2.2e-23 114.4 115 52.2
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 2.4e-22 110.9 237 35.4
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 2.7e-21 107.5 270 31.5
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 7.2e-19 99.4 67 74.6
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 4.0e-17 93.6 65 75.4
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 7.5e-16 89.4 66 65.2
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 6.3e-15 86.3 53 73.6
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.3e-12 78.6 75 56.0


User provided reference genes

Program Settings