Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 3.8e-123 444.9 232 100.0
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 1.3e-94 350.1 232 78.4
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 9.2e-93 344.0 232 77.6
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.3e-91 340.1 232 75.9
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 8.0e-89 330.9 201 86.6
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 2.3e-88 329.3 232 74.1
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 3.0e-88 328.9 232 74.6
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 3.0e-88 328.9 232 74.6
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 5.2e-88 328.2 232 73.3
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 4.4e-87 325.1 232 72.4
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 4.4e-87 325.1 232 73.3
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 5.7e-87 324.7 232 74.1
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.5e-87 324.3 232 73.3
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.5e-87 324.3 232 72.8
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 1.7e-86 323.2 232 72.4
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 2.2e-86 322.8 232 73.7
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 2.2e-86 322.8 232 71.6
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 4.9e-86 321.6 232 72.8
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.4e-85 320.1 232 72.0
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 1.4e-85 320.1 232 71.6
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.8e-85 319.7 232 71.1
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.8e-85 319.7 232 71.6
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 3.2e-85 318.9 232 71.1
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 4.1e-85 318.5 232 71.6
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 4.1e-85 318.5 232 71.6
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 4.1e-85 318.5 232 70.7
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 5.4e-85 318.2 232 69.8
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 5.4e-85 318.2 232 72.0
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 1.2e-84 317.0 232 72.0
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.2e-84 317.0 232 71.1
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.0e-83 313.9 232 70.3
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.0e-83 313.9 231 71.4
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 3.0e-83 312.4 232 71.1
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 3.9e-83 312.0 232 69.4
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 5.0e-83 311.6 232 70.3
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 5.0e-83 311.6 232 69.4
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 3.3e-82 308.9 242 67.8
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 3.3e-82 308.9 232 69.4
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 5.6e-82 308.1 232 69.4
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 7.3e-82 307.8 232 68.1
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 7.3e-82 307.8 232 70.3
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 1.6e-81 306.6 232 69.8
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 1.6e-81 306.6 234 67.9
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 3.6e-81 305.4 232 68.5
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 1.1e-80 303.9 232 66.8
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.4e-80 303.5 232 69.4
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 4.0e-80 302.0 252 65.5
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 5.2e-80 301.6 232 68.5
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.2e-79 300.4 232 65.9
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 2.6e-79 299.3 232 65.9
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 3.4e-79 298.9 233 67.0
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 3.4e-79 298.9 265 62.3
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 5.8e-79 298.1 232 69.4
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 7.5e-79 297.7 232 67.2
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 7.5e-79 297.7 232 68.5
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 9.8e-79 297.4 232 66.8
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 2.9e-78 295.8 232 65.1
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 2.9e-78 295.8 232 65.5
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 3.7e-78 295.4 232 65.9
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 4.9e-78 295.0 232 66.8
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 4.9e-78 295.0 232 65.1
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 8.3e-78 294.3 234 67.5
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.1e-77 293.9 233 66.1
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 1.4e-77 293.5 234 67.5
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.9e-77 293.1 233 65.7
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 3.2e-77 292.4 232 66.8
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 5.4e-77 291.6 232 65.9
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 7.0e-77 291.2 222 68.5
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 9.2e-77 290.8 233 65.2
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 4.6e-76 288.5 232 62.9
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 4.6e-76 288.5 232 64.7
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 7.8e-76 287.7 256 61.7
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.0e-75 287.3 232 67.2
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 3.0e-75 285.8 232 64.7
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 6.6e-75 284.6 254 59.8
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 8.6e-75 284.3 232 63.4
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 1.5e-74 283.5 232 64.2
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.5e-74 283.5 232 65.9
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 3.3e-74 282.3 232 64.2
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 5.6e-74 281.6 309 54.0
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 5.6e-74 281.6 232 64.2
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 5.6e-74 281.6 232 64.2
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 7.3e-74 281.2 234 65.8
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 7.3e-74 281.2 232 63.4
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 7.3e-74 281.2 232 62.1
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 9.5e-74 280.8 232 63.4
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 1.6e-73 280.0 232 62.9
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.6e-73 280.0 232 63.4
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.6e-73 280.0 222 65.3
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 2.8e-73 279.3 234 62.8
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 3.6e-73 278.9 232 62.9
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 4.7e-73 278.5 232 62.9
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 6.2e-73 278.1 232 62.5
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 6.2e-73 278.1 232 63.8
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 8.1e-73 277.7 232 62.5
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 1.1e-72 277.3 232 62.5
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 8.9e-72 274.2 232 62.9
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 1.5e-71 273.5 234 62.4
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 4.4e-71 271.9 234 61.1
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.2e-70 269.6 232 61.2
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.1e-69 267.3 232 59.5
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 1.9e-69 266.5 234 60.3
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 2.7e-68 262.7 238 58.8
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 6.0e-68 261.5 362 47.0
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 3.3e-66 255.8 222 59.0
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 2.4e-64 249.6 216 59.7
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 3.4e-63 245.7 320 48.4
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.3e-62 243.8 232 57.3
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 2.1e-60 236.5 232 53.4
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.7e-60 236.1 183 66.1
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 1.2e-55 220.7 166 70.5
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 2.0e-55 219.9 232 53.4
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.6e-55 219.5 166 70.5
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 7.6e-55 218.0 235 53.6
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.3e-54 217.2 181 62.4
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.3e-54 217.2 168 65.5
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.1e-52 209.9 142 74.6
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 4.0e-48 195.7 143 69.2
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 6.9e-48 194.9 285 44.6
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.2e-47 194.1 166 60.8
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 4.5e-47 192.2 237 48.9
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 3.8e-46 189.1 230 49.1
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.1e-45 187.6 151 63.6
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 2.4e-45 186.4 117 77.8
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 7.9e-44 181.4 140 64.3
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 6.7e-43 178.3 111 79.3
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 4.8e-41 172.2 247 46.2
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 6.9e-40 168.3 266 43.6
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 4.5e-39 165.6 245 43.3
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 2.1e-36 156.8 163 54.6
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 7.9e-36 154.8 180 48.9
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.3e-35 154.1 141 56.0
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 3.9e-35 152.5 141 58.2
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 3.3e-34 149.4 292 36.0
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.3e-33 147.5 220 42.3
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.0e-32 142.5 120 60.0
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 4.8e-25 119.0 92 62.0
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.3e-22 110.9 133 50.4
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.9e-21 107.1 115 50.4
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.6e-20 102.8 79 60.8
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 6.1e-20 102.1 97 57.7
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 7.4e-18 95.1 85 61.2
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 3.1e-16 89.7 77 62.3
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.0e-15 87.0 74 58.1
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 2.0e-15 87.0 73 57.5
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.6e-15 86.7 108 50.0
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.0e-14 84.7 65 64.6
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 3.8e-14 82.8 90 50.0
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.9e-13 80.5 132 38.6
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 1.9e-13 80.5 129 38.8
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 5.5e-13 79.0 54 74.1
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 3.6e-12 76.3 90 43.3
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 1.4e-11 74.3 61 54.1
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 2.3e-11 73.6 60 65.0
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 1.8e-08 63.9 50 58.0
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 1.5e-07 60.8 47 70.2
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 1.3e-06 57.8 93 39.8
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.9e-06 56.6 38 63.2


User provided reference genes

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