Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 4.7e-180 634.4 321 100.0
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 2.5e-101 372.9 346 63.0
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.6e-98 362.8 346 61.3
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.2e-90 337.4 347 58.2
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 4.5e-90 335.5 346 58.1
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.9e-89 332.8 352 56.5
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 7.2e-88 328.2 351 56.7
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 1.2e-87 327.4 350 56.6
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 1.2e-87 327.4 352 57.7
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 1.0e-86 324.3 354 54.8
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 1.4e-86 323.9 346 56.4
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.3e-86 323.2 346 55.8
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.9e-86 322.4 346 55.2
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 6.7e-86 321.6 346 55.2
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 8.8e-86 321.2 351 55.0
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 2.0e-85 320.1 351 55.0
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 3.3e-85 319.3 354 54.8
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 3.3e-85 319.3 346 55.5
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 4.4e-85 318.9 353 56.1
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 4.4e-85 318.9 346 55.5
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 4.4e-85 318.9 347 55.6
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 7.4e-85 318.2 354 54.5
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.4e-85 318.2 346 55.5
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 7.4e-85 318.2 350 55.4
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.7e-84 317.0 346 54.9
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 3.7e-84 315.8 319 58.0
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.7e-84 315.8 346 54.3
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 4.8e-84 315.5 346 54.3
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 8.2e-84 314.7 349 54.4
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 1.1e-83 314.3 352 54.8
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 3.1e-83 312.8 349 53.9
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 4.1e-83 312.4 350 55.1
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 5.3e-83 312.0 318 58.2
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 9.1e-83 311.2 352 53.1
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 1.2e-82 310.8 353 53.3
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.6e-82 310.5 351 55.6
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.6e-82 310.5 319 57.7
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.6e-82 310.5 326 57.4
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 2.0e-82 310.1 352 53.4
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 2.0e-82 310.1 346 54.9
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 2.6e-82 309.7 346 54.3
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 3.5e-82 309.3 349 54.7
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 3.5e-82 309.3 315 57.8
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 4.5e-82 308.9 351 53.8
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 4.5e-82 308.9 346 54.6
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 4.5e-82 308.9 319 56.4
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 5.9e-82 308.5 356 52.5
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 5.9e-82 308.5 352 53.4
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 5.9e-82 308.5 353 53.3
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.7e-82 308.1 341 54.0
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.7e-81 307.0 346 53.2
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 2.2e-81 306.6 349 54.4
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 3.8e-81 305.8 352 53.7
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 6.5e-81 305.1 357 54.1
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 8.5e-81 304.7 330 55.8
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 8.5e-81 304.7 354 52.3
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.1e-80 304.3 351 53.8
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.9e-80 303.5 319 56.1
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 1.9e-80 303.5 346 53.5
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 2.5e-80 303.1 346 54.3
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 7.2e-80 301.6 351 53.3
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 7.2e-80 301.6 343 53.4
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 1.6e-79 300.4 352 52.6
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 2.1e-79 300.1 346 54.0
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 2.7e-79 299.7 315 55.9
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.7e-79 299.7 346 53.8
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 3.6e-79 299.3 329 55.9
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.6e-79 299.3 319 55.5
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 4.7e-79 298.9 324 54.3
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 4.7e-79 298.9 352 53.1
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.7e-79 298.9 356 51.4
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 6.1e-79 298.5 347 53.6
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.0e-78 297.7 355 52.4
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.0e-78 297.7 354 55.4
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.4e-78 297.4 330 53.9
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.3e-78 296.6 354 52.5
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 3.0e-78 296.2 339 52.2
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 4.0e-78 295.8 352 53.1
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 5.2e-78 295.4 352 53.1
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 6.8e-78 295.0 348 51.7
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 8.8e-78 294.7 307 57.0
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.0e-77 293.5 351 53.0
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 2.0e-77 293.5 351 53.0
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 2.6e-77 293.1 268 60.8
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 4.4e-77 292.4 344 51.7
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 7.5e-77 291.6 350 52.9
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 1.3e-76 290.8 351 52.7
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 1.7e-76 290.4 351 52.7
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.7e-76 290.4 348 52.3
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 4.8e-76 288.9 355 51.8
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 6.3e-76 288.5 259 62.9
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.3e-76 288.5 359 52.1
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 6.3e-76 288.5 318 53.5
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.4e-75 287.3 358 52.2
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.4e-75 287.3 358 51.7
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.4e-75 287.3 346 51.4
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 4.1e-75 285.8 357 51.3
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 9.1e-75 284.6 354 50.3
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.6e-74 283.9 316 53.5
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.5e-74 282.7 357 51.5
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 3.5e-74 282.7 346 52.3
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 3.5e-74 282.7 336 51.8
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 7.7e-74 281.6 342 52.9
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.3e-73 280.8 389 48.1
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.9e-73 279.6 354 52.8
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.8e-73 279.3 348 52.6
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 5.0e-73 278.9 315 54.9
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 8.5e-73 278.1 354 51.4
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 8.5e-73 278.1 354 51.4
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 1.1e-72 277.7 353 50.7
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 1.5e-72 277.3 347 51.6
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 1.9e-72 276.9 347 51.3
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 1.9e-72 276.9 329 53.5
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 1.9e-72 276.9 347 51.3
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 1.9e-72 276.9 347 51.3
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 2.5e-72 276.6 354 51.4
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 2.5e-72 276.6 354 51.4
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.5e-72 276.6 348 51.7
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 3.2e-72 276.2 353 50.7
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 4.2e-72 275.8 346 51.2
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 4.2e-72 275.8 346 51.2
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 7.2e-72 275.0 318 52.2
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.6e-71 273.9 270 57.0
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.6e-71 273.9 353 49.6
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 2.1e-71 273.5 347 50.1
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 2.1e-71 273.5 335 51.0
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 2.7e-71 273.1 270 58.1
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 3.0e-70 269.6 353 49.3
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 4.0e-70 269.2 351 51.3
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 4.0e-70 269.2 326 51.5
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 6.8e-70 268.5 328 50.9
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 4.4e-69 265.8 334 50.0
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.3e-68 264.2 304 52.3
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 1.3e-68 264.2 332 51.5
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 4.1e-67 259.2 239 61.9
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.6e-66 257.3 352 48.6
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 4.5e-66 255.8 248 60.5
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 4.2e-64 249.2 363 45.5
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 5.5e-64 248.8 278 53.2
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 5.5e-64 248.8 270 54.1
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 9.5e-64 248.1 349 45.8
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 9.5e-64 248.1 267 53.2
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 6.1e-63 245.4 349 46.4
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 5.2e-62 242.3 246 56.5
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.8e-60 236.5 348 46.6
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.9e-60 235.7 271 49.8
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 2.0e-58 230.3 349 44.7
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 1.7e-57 227.3 306 45.4
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.8e-53 212.2 184 63.6
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 8.3e-52 208.4 325 44.0
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.9e-49 199.5 268 48.5
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.1e-46 189.9 313 44.1
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 3.4e-45 186.4 157 66.2
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 5.8e-45 185.7 284 42.3
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.7e-44 183.0 170 58.2
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 3.5e-42 176.4 258 42.6
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.5e-40 170.2 153 60.1
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 9.5e-40 168.3 149 58.4
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 4.7e-39 166.0 308 37.3
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.4e-38 164.5 298 37.9
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.2e-31 141.4 282 34.4
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 1.6e-31 141.0 222 39.6
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.4e-30 137.9 171 48.0
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 6.8e-30 135.6 75 85.3
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.0e-25 121.7 124 56.5
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.1e-23 114.0 192 38.0
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.9e-20 103.6 189 40.2
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 1.4e-19 101.3 132 47.0
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 8.7e-17 92.0 49 91.8
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 7.9e-10 68.9 88 45.5
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.5e-08 63.9 39 74.4
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.3e-08 63.2 40 70.0
SGA_v2.0_scaffold69G23132 Striga asiatica HOM05D000011 ORTHO05D000018 7.4e-08 62.4 32 90.6
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 6.9e-06 55.8 82 42.7


User provided reference genes

Program Settings