Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 7.4e-161 570.5 285 100.0
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 2.2e-43 180.3 133 66.9
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 4.3e-36 156.0 150 54.0
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 5.0e-24 115.9 207 38.6
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 1.9e-23 114.0 205 38.5
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 2.5e-23 113.6 144 39.6
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 9.4e-23 111.7 160 41.9
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.0e-21 108.2 184 38.6
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 1.5e-20 104.4 125 40.8
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 3.3e-20 103.2 118 46.6
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 3.3e-20 103.2 128 42.2
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 1.3e-19 101.3 246 30.1
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 3.7e-19 99.8 203 32.5
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 8.2e-19 98.6 119 45.4
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.1e-18 98.2 197 34.5
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 1.8e-18 97.4 226 31.0
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 5.3e-18 95.9 128 40.6
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 9.1e-18 95.1 136 41.2
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 1.2e-17 94.7 124 38.7
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 1.6e-17 94.4 172 34.3
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 2.6e-17 93.6 127 40.2
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 2.6e-17 93.6 183 33.3
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 2.6e-17 93.6 184 33.7
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 2.6e-17 93.6 243 28.0
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 7.7e-17 92.0 251 30.7
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 7.7e-17 92.0 221 29.9
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 2.2e-16 90.5 114 43.0
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 2.9e-16 90.1 249 30.9
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 3.8e-16 89.7 125 36.0
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 5.0e-16 89.4 184 30.4
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 8.5e-16 88.6 122 41.0
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 1.1e-15 88.2 171 32.7
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 1.5e-15 87.8 132 37.9
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 1.9e-15 87.4 113 40.7
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 3.2e-15 86.7 175 31.4
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 4.2e-15 86.3 212 30.2
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 4.2e-15 86.3 125 40.0
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 7.2e-15 85.5 133 33.8
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 1.2e-14 84.7 249 30.5
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 1.2e-14 84.7 226 30.1
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 4.7e-14 82.8 123 36.6
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 4.7e-14 82.8 115 39.1
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 6.1e-14 82.4 125 39.2
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 6.1e-14 82.4 221 30.8
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 8.0e-14 82.0 190 30.0
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 8.0e-14 82.0 133 32.3
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 8.0e-14 82.0 177 31.6
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 1.0e-13 81.6 247 27.9
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 1.4e-13 81.3 141 36.2
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.4e-13 81.3 132 35.6
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.8e-13 80.9 132 36.4
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 1.8e-13 80.9 88 40.9
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 2.3e-13 80.5 228 28.9
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 2.3e-13 80.5 174 32.8
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 6.8e-13 79.0 117 35.9
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 8.8e-13 78.6 75 56.0
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 8.8e-13 78.6 133 37.6
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 1.2e-12 78.2 228 29.4
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 1.2e-12 78.2 132 37.1
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 1.5e-12 77.8 118 37.3
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 2.0e-12 77.4 124 34.7
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 3.4e-12 76.6 126 38.9
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 3.4e-12 76.6 126 34.1
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 4.4e-12 76.3 237 28.7
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 4.4e-12 76.3 143 35.7
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 9.7e-12 75.1 122 36.1
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 1.3e-11 74.7 196 31.1
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 1.7e-11 74.3 131 32.1
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 1.7e-11 74.3 125 35.2
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 2.8e-11 73.6 215 30.2
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 8.3e-11 72.0 91 41.8
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 3.1e-10 70.1 135 35.6
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 7.0e-10 68.9 98 38.8
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 1.2e-09 68.2 327 24.8
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 1.6e-09 67.8 98 39.8
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 2.7e-09 67.0 70 40.0
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 1.7e-08 64.3 95 32.6
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 3.8e-08 63.2 95 32.6
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 6.5e-08 62.4 119 35.3
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 1.1e-07 61.6 135 34.8
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 2.7e-06 57.0 76 43.4


User provided reference genes

Program Settings