Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 8.2e-130 467.2 265 100.0
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 3.5e-48 196.1 292 51.4
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 3.3e-46 189.5 283 53.0
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 4.0e-44 182.6 276 48.9
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-43 180.6 298 49.7
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 2.5e-38 163.3 286 49.0
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.3e-37 161.0 281 47.0
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-35 154.1 294 45.2
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 2.6e-35 153.3 233 47.6
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 1.7e-34 150.6 279 45.9
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 1.7e-34 150.6 279 45.9
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.5e-33 145.6 214 48.1
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 6.0e-32 142.1 239 47.7
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 7.9e-32 141.7 188 49.5
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 7.9e-32 141.7 174 51.7
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.0e-31 141.4 261 44.8
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.3e-31 141.0 183 51.4
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 3.0e-31 139.8 157 60.5
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.9e-31 139.4 256 39.8
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 5.1e-31 139.0 212 45.8
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 8.7e-31 138.3 292 42.8
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 2.5e-30 136.7 306 39.5
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 3.3e-30 136.3 157 58.0
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 2.8e-29 133.3 239 46.0
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 2.0e-27 127.1 275 42.2
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.5e-27 125.9 155 51.6
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 7.6e-27 125.2 281 38.1
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.0e-26 124.8 270 43.0
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.0e-26 124.8 206 40.8
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.3e-26 124.4 306 40.2
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 1.3e-26 124.4 304 41.1
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.3e-26 124.4 154 51.9
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.7e-26 124.0 304 41.1
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.2e-26 123.6 198 44.4
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.9e-26 123.2 279 43.0
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 6.5e-26 122.1 200 46.0
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 6.5e-26 122.1 287 41.1
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.1e-25 121.3 199 44.2
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 4.2e-25 119.4 310 41.0
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 4.2e-25 119.4 145 54.5
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 4.2e-25 119.4 280 42.5
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 5.5e-25 119.0 261 37.5
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 7.1e-25 118.6 300 40.3
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.2e-24 117.9 176 46.6
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.1e-24 117.1 273 37.4
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.7e-24 116.7 306 39.2
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 4.6e-24 115.9 230 39.1
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 4.6e-24 115.9 305 40.0
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 6.1e-24 115.5 188 47.3
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.0e-23 114.8 306 35.6
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.3e-23 114.4 303 39.9
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.8e-23 114.0 308 40.9
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.8e-23 114.0 181 45.3
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.3e-23 113.6 299 39.5
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 2.3e-23 113.6 188 47.9
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.0e-23 113.2 276 41.7
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 5.1e-23 112.5 174 47.1
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 5.1e-23 112.5 254 43.7
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 5.1e-23 112.5 311 38.9
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 6.7e-23 112.1 195 43.6
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 8.7e-23 111.7 185 44.3
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.1e-22 111.3 307 38.8
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.5e-22 110.9 309 37.5
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 3.3e-22 109.8 304 33.9
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 3.3e-22 109.8 282 40.4
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.3e-22 109.8 261 42.1
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 4.3e-22 109.4 198 46.0
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.7e-22 109.0 190 41.6
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.3e-21 107.8 182 44.0
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.8e-21 106.7 188 44.7
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 2.8e-21 106.7 296 35.5
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 2.8e-21 106.7 279 39.8
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.7e-21 106.3 327 36.7
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.7e-21 106.3 327 36.7
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 4.8e-21 105.9 268 32.8
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 4.8e-21 105.9 198 41.9
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 4.8e-21 105.9 169 45.0
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.8e-21 105.9 301 39.2
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 8.2e-21 105.1 327 36.4
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 8.2e-21 105.1 328 37.2
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 8.2e-21 105.1 308 38.0
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.1e-20 104.8 306 36.3
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 1.1e-20 104.8 200 41.5
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.8e-20 104.0 294 38.8
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 2.4e-20 103.6 177 44.6
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.4e-20 103.6 265 37.7
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 3.1e-20 103.2 307 36.8
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 4.1e-20 102.8 171 45.0
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 5.3e-20 102.4 203 42.9
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.3e-20 102.4 306 38.6
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.3e-20 102.4 311 37.3
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 5.3e-20 102.4 279 37.3
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 6.9e-20 102.1 247 42.1
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 6.9e-20 102.1 257 40.1
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 9.0e-20 101.7 174 44.8
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.5e-19 100.9 223 39.0
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.0e-19 100.5 171 43.9
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 2.0e-19 100.5 171 43.9
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.6e-19 100.1 212 40.1
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 2.6e-19 100.1 175 48.0
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.4e-19 99.8 217 40.1
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 3.4e-19 99.8 311 37.0
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 3.4e-19 99.8 284 38.7
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 4.5e-19 99.4 171 42.7
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 7.7e-19 98.6 278 33.5
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.3e-18 97.8 170 40.6
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 1.3e-18 97.8 325 35.7
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.3e-18 97.8 325 35.7
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.3e-18 97.8 156 47.4
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.7e-18 97.4 210 40.5
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.7e-18 97.4 171 45.0
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.2e-18 97.1 202 40.1
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.9e-18 96.7 172 44.2
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.9e-18 96.7 335 36.4
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 8.5e-18 95.1 200 41.5
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.1e-17 94.7 232 39.7
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.1e-17 94.7 344 31.7
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.4e-17 94.4 174 43.1
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.4e-17 94.4 147 43.5
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.9e-17 94.0 178 42.1
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 2.5e-17 93.6 182 40.7
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 3.2e-17 93.2 298 39.3
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 4.2e-17 92.8 58 77.6
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 4.2e-17 92.8 327 35.2
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 7.2e-17 92.0 181 41.4
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 1.2e-16 91.3 185 41.1
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.6e-16 90.9 282 40.1
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.6e-16 90.9 156 41.7
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 2.1e-16 90.5 318 35.2
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 2.1e-16 90.5 174 40.2
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 2.7e-16 90.1 283 29.3
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.7e-16 90.1 240 40.8
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.7e-16 90.1 309 35.6
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 3.6e-16 89.7 183 39.9
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.6e-16 89.4 323 35.6
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 4.6e-16 89.4 299 36.8
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 1.0e-15 88.2 189 42.9
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.8e-15 87.4 293 35.5
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 3.0e-15 86.7 177 42.9
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 3.9e-15 86.3 186 39.8
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 6.7e-15 85.5 190 36.8
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 8.8e-15 85.1 204 36.8
Lsat_1_v5_gn_8_79621 Lactuca sativa HOM05D004060 ORTHO05D001964 1.1e-14 84.7 199 39.2
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.0e-14 84.0 187 38.5
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.5e-14 83.6 309 35.3
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 3.3e-14 83.2 204 35.8
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 3.3e-14 83.2 204 35.8
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 3.3e-14 83.2 204 35.8
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 4.3e-14 82.8 195 35.4
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 5.7e-14 82.4 58 70.7
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 5.7e-14 82.4 202 36.6
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 9.7e-14 81.6 198 36.9
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.7e-13 80.9 337 32.6
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 3.7e-13 79.7 319 33.9
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 4.8e-13 79.3 200 40.0
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 4.8e-13 79.3 295 35.9
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 6.3e-13 79.0 64 87.5
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 6.3e-13 79.0 216 33.8
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.8e-12 77.4 64 87.5
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 2.4e-12 77.0 156 37.2
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 6.9e-12 75.5 227 36.6
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 9.1e-12 75.1 125 44.0
vmacro22364 Vaccinium macrocarpon HOM05D004060 ORTHO05D001964 9.1e-12 75.1 109 55.0
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.5e-11 74.3 155 41.3
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 6.5e-10 68.9 329 30.7
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 1.4e-09 67.8 245 32.2
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.5e-09 67.0 188 41.0
Pp3c12_4280 Physcomitrium patens HOM05D001293 ORTHO05D006204 2.1e-08 63.9 145 27.6
Solyc10g080240.1 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.1e-08 63.9 51 64.7
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 3.6e-08 63.2 328 32.3
Aqoxy7G00777 Aquilegia oxysepala HOM05D024910 ORTHO05D014828 1.0e-07 61.6 100 37.0
Pp3c7_18930 Physcomitrium patens HOM05D001293 ORTHO05D001143 3.3e-06 56.6 139 28.8
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 9.7e-06 55.1 94 38.3


User provided reference genes

Program Settings