Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.4e-84 316.2 162 100.0
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 9.6e-73 276.9 159 83.6
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 6.4e-69 264.2 158 78.5
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 8.4e-69 263.8 158 78.5
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 4.2e-68 261.5 158 78.5
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.2e-67 260.0 159 77.4
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 2.1e-67 259.2 157 79.0
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 2.7e-67 258.8 163 76.1
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.7e-67 258.8 154 81.8
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 3.5e-67 258.5 155 78.7
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 3.5e-67 258.5 162 75.9
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 3.5e-67 258.5 157 78.3
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 4.6e-67 258.1 157 77.7
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 4.6e-67 258.1 157 77.7
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.6e-67 258.1 155 78.1
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 4.6e-67 258.1 154 82.5
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 6.0e-67 257.7 157 80.3
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 7.9e-67 257.3 157 77.1
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.0e-66 256.9 155 78.1
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.3e-66 256.5 159 76.7
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.3e-66 256.5 154 78.6
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.3e-66 256.5 154 78.6
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.8e-66 256.1 156 80.1
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.3e-66 255.8 155 77.4
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 3.9e-66 255.0 154 78.6
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 3.9e-66 255.0 158 80.4
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 5.1e-66 254.6 157 77.7
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 75.3
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 76.6
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.5e-65 253.1 158 77.2
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.5e-65 253.1 158 79.1
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.5e-65 252.3 158 75.9
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 3.3e-65 251.9 154 80.5
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 5.6e-65 251.1 158 79.7
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 7.4e-65 250.8 158 75.9
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 7.4e-65 250.8 154 78.6
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.6e-64 249.6 156 76.3
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 2.8e-64 248.8 157 77.1
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 3.7e-64 248.4 160 73.1
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 4.8e-64 248.1 159 75.5
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 4.8e-64 248.1 156 76.3
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 6.2e-64 247.7 158 74.1
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 6.2e-64 247.7 159 74.8
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 6.2e-64 247.7 161 73.9
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 8.1e-64 247.3 159 74.8
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 8.1e-64 247.3 161 73.3
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 8.1e-64 247.3 154 77.3
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.1e-63 246.9 159 73.6
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.4e-63 246.5 159 74.8
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 1.4e-63 246.5 161 74.5
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.4e-63 246.5 158 76.6
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 155 77.4
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.4e-63 245.7 140 85.7
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 2.4e-63 245.7 159 73.0
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 2.4e-63 245.7 159 74.2
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 3.1e-63 245.4 156 74.4
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 4.0e-63 245.0 158 73.4
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 5.3e-63 244.6 161 72.7
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.3e-63 244.6 161 72.7
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.3e-63 244.6 161 72.7
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.3e-63 244.6 161 72.7
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.3e-63 244.6 161 72.7
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.3e-63 244.6 161 72.7
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 6.9e-63 244.2 155 74.8
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 6.9e-63 244.2 158 72.8
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 9.0e-63 243.8 158 75.3
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 9.0e-63 243.8 160 75.0
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 1.2e-62 243.4 158 74.1
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 1.2e-62 243.4 159 71.7
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 2.6e-62 242.3 155 73.5
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 2.6e-62 242.3 158 75.3
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 7.6e-62 240.7 159 71.7
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.9e-61 238.8 154 74.7
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.9e-61 238.8 158 74.1
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 4.9e-61 238.0 159 69.8
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 2.5e-60 235.7 157 70.7
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 3.2e-60 235.3 154 72.7
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 3.2e-60 235.3 154 72.7
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 4.2e-60 235.0 158 71.5
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 9.3e-60 233.8 154 70.8
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 9.3e-60 233.8 154 72.1
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 9.3e-60 233.8 158 72.2
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.2e-59 233.4 158 70.9
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.6e-59 233.0 154 73.4
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 2.7e-59 232.3 154 70.8
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 2.7e-59 232.3 151 74.8
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.7e-59 232.3 158 69.0
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 4.6e-59 231.5 154 70.8
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 4.6e-59 231.5 159 69.2
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.3e-58 229.9 154 70.8
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.3e-58 229.9 158 69.0
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.8e-58 229.6 156 71.2
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.8e-58 229.6 156 71.2
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 2.3e-58 229.2 159 69.8
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 2.3e-58 229.2 159 69.8
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 2.3e-58 229.2 159 69.8
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 2.3e-58 229.2 159 69.8
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 2.3e-58 229.2 159 69.8
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 3.0e-58 228.8 158 70.3
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 5.1e-58 228.0 207 58.0
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 6.7e-58 227.6 158 70.3
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 6.7e-58 227.6 158 70.3
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 6.7e-58 227.6 150 72.0
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 6.7e-58 227.6 156 67.3
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.5e-57 226.5 150 72.0
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 3.3e-57 225.3 150 71.3
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 4.3e-57 224.9 149 71.8
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 4.3e-57 224.9 149 71.8
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 4.3e-57 224.9 149 71.8
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 9.6e-57 223.8 142 75.4
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.6e-56 223.0 156 69.2
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 2.1e-56 222.6 156 69.2
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 2.4e-55 219.2 145 71.0
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 6.9e-55 217.6 145 71.0
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 1.2e-54 216.9 210 55.2
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.0e-54 216.1 143 73.4
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.1e-52 210.3 249 47.4
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.4e-52 209.9 190 57.9
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 6.1e-51 204.5 125 76.8
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.3e-50 202.6 135 71.9
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 5.1e-50 201.4 155 61.9
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.5e-49 199.9 123 78.0
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 3.3e-49 198.7 302 41.1
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 7.7e-46 187.6 156 57.1
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.8e-45 185.3 156 57.7
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 7.2e-44 181.0 139 66.2
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.0e-42 177.2 123 69.9
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 1.8e-42 176.4 111 74.8
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.2e-35 153.7 99 77.8
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.4e-34 150.2 133 57.1
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.4e-34 150.2 111 70.3
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 1.3e-32 143.7 99 71.7
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 6.3e-32 141.4 154 47.4
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.7e-29 133.3 130 53.1
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 1.9e-28 129.8 77 76.6
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.5e-28 129.4 151 43.0
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 7.2e-28 127.9 151 43.0
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 2.1e-27 126.3 146 53.4
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 3.6e-27 125.6 150 43.3
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 1.7e-24 116.7 85 65.9
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.4e-23 113.6 135 43.0
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 7.7e-22 107.8 143 39.9
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 7.7e-22 107.8 65 75.4
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.0e-21 107.5 96 58.3
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.0e-21 107.5 96 58.3
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.0e-21 107.5 65 75.4
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.5e-20 103.6 64 75.0
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 7.2e-20 101.3 138 40.6
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.1e-19 99.8 64 71.9
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 6.8e-18 94.7 101 55.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 6.3e-16 88.2 78 57.7
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 3.7e-08 62.4 69 50.7
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-07 60.8 69 49.3


User provided reference genes

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