Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 3.9e-135 485.0 271 100.0
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 3.0e-79 299.3 269 66.2
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 1.5e-73 280.4 269 63.9
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 8.0e-72 274.6 272 65.4
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 1.4e-71 273.9 266 62.0
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 9.7e-70 267.7 269 56.1
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 1.8e-68 263.5 268 57.5
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 3.1e-68 262.7 266 59.4
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 9.1e-68 261.2 273 61.9
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 1.2e-67 260.8 275 54.5
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.7e-67 259.6 265 58.1
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.7e-67 259.6 268 56.7
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 4.5e-67 258.8 272 57.0
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 4.5e-67 258.8 268 60.8
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 7.7e-67 258.1 269 61.0
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 7.7e-67 258.1 268 56.7
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.0e-66 257.7 265 56.6
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 2.9e-66 256.1 271 57.9
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.5e-66 255.0 262 58.4
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 8.5e-66 254.6 272 56.6
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 1.5e-65 253.8 274 58.4
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 2.5e-65 253.1 270 58.1
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 7.2e-65 251.5 277 54.9
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 7.2e-65 251.5 276 55.8
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 9.4e-65 251.1 270 57.0
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 1.6e-64 250.4 270 55.9
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 1.6e-64 250.4 271 52.8
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 2.1e-64 250.0 270 56.7
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 2.7e-64 249.6 270 56.3
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 6.1e-64 248.4 267 56.6
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 8.0e-64 248.1 274 56.9
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 1.0e-63 247.7 269 56.1
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 1.8e-63 246.9 271 57.6
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 1.8e-63 246.9 271 56.5
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 6.8e-63 245.0 267 58.4
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 8.8e-63 244.6 269 56.1
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 1.5e-62 243.8 263 58.9
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 2.0e-62 243.4 266 59.0
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 2.0e-62 243.4 274 55.8
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 3.4e-62 242.7 273 55.7
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 4.4e-62 242.3 275 54.2
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 9.8e-62 241.1 274 55.8
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 9.8e-62 241.1 270 59.3
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 9.8e-62 241.1 278 55.4
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 1.7e-61 240.4 274 49.6
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 2.2e-61 240.0 254 59.8
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 4.8e-61 238.8 274 53.3
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 6.3e-61 238.4 268 56.3
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 8.3e-61 238.0 269 53.9
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 8.3e-61 238.0 271 55.0
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.4e-60 237.3 270 56.7
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 1.8e-60 236.9 269 53.5
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 2.4e-60 236.5 274 57.3
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 2.4e-60 236.5 272 56.6
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 2.4e-60 236.5 272 55.9
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 3.1e-60 236.1 268 57.1
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 4.1e-60 235.7 270 55.2
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 4.1e-60 235.7 270 54.4
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 5.4e-60 235.3 271 55.7
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 7.0e-60 235.0 268 55.2
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 9.1e-60 234.6 272 54.0
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 9.1e-60 234.6 270 54.4
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 1.6e-59 233.8 270 54.4
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 2.7e-59 233.0 272 53.7
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 4.5e-59 232.3 273 53.1
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 1.7e-58 230.3 301 51.5
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 8.6e-58 228.0 263 49.8
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 8.6e-58 228.0 273 53.1
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 1.1e-57 227.6 263 52.1
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 1.5e-57 227.3 275 53.8
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 1.9e-57 226.9 275 52.7
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 2.5e-57 226.5 271 52.8
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 2.5e-57 226.5 271 52.8
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 2.5e-57 226.5 270 55.6
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 3.3e-57 226.1 271 52.8
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 5.5e-57 225.3 265 52.8
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 7.2e-57 224.9 265 52.8
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 1.6e-56 223.8 271 49.4
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 2.1e-56 223.4 280 53.9
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 1.2e-54 217.6 268 50.7
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 1.5e-54 217.2 274 56.6
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 1.5e-54 217.2 256 55.1
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.7e-53 213.8 232 56.5
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 1.7e-53 213.8 271 50.9
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 1.2e-51 207.6 240 58.8
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 1.7e-50 203.8 264 54.5
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 4.3e-49 199.1 261 52.9
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 5.6e-49 198.7 190 56.3
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 1.6e-48 197.2 253 48.2
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.1e-48 196.8 271 47.6
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 3.6e-48 196.1 197 56.9
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 6.1e-48 195.3 260 49.6
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 1.8e-47 193.7 274 47.4
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 4.4e-46 189.1 241 51.9
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 7.5e-46 188.3 180 57.2
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 7.5e-46 188.3 191 55.0
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 2.4e-44 183.3 225 51.1
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 8.0e-40 168.3 153 60.1
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 1.8e-39 167.2 283 37.8
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 4.9e-37 159.1 273 37.4
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 1.9e-36 157.1 272 37.5
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 5.4e-36 155.6 276 41.7
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.3e-34 151.0 175 52.0
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 1.6e-32 144.1 280 37.1
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.3e-29 134.4 171 45.0
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.9e-28 130.6 118 66.1
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.1e-27 127.1 181 47.5
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 3.0e-26 123.2 255 34.1
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 8.6e-26 121.7 262 34.0
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 8.1e-24 115.2 102 58.8
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 8.1e-24 115.2 102 58.8
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 4.2e-20 102.8 333 28.8
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 6.6e-18 95.5 182 36.3
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.9e-17 94.0 237 35.4
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 1.9e-17 94.0 160 38.8
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 9.0e-15 85.1 67 67.2
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 1.3e-08 64.7 131 37.4
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 2.1e-08 63.9 43 60.5
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 3.6e-08 63.2 57 56.1
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 8.1e-08 62.0 135 34.8


User provided reference genes

Program Settings