Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 6.3e-282 973.4 474 100.0
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 6.0e-224 780.8 440 85.2
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 8.6e-223 776.9 444 83.1
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 4.3e-222 774.6 439 84.7
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.6e-221 772.7 442 82.8
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 2.1e-221 772.3 439 83.8
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.2e-219 766.5 439 82.9
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 4.4e-219 764.6 439 82.0
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 5.8e-219 764.2 439 83.8
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.1e-217 760.0 442 79.9
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 3.5e-216 755.0 439 81.3
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 1.3e-215 753.1 439 79.7
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 4.8e-213 744.6 439 79.5
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 1.8e-212 742.7 440 80.0
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 3.1e-212 741.9 443 79.5
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 6.9e-212 740.7 444 80.2
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 1.5e-211 739.6 438 79.2
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 1.5e-211 739.6 439 77.9
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 2.0e-211 739.2 439 78.8
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 9.9e-211 736.9 438 78.8
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 9.9e-211 736.9 434 79.5
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.7e-210 736.1 438 78.1
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 2.2e-210 735.7 439 78.6
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 4.9e-210 734.6 437 79.2
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 8.4e-210 733.8 439 78.1
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.9e-209 732.6 442 78.7
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 1.9e-209 732.6 439 78.8
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 9.3e-209 730.3 432 80.6
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.2e-208 729.9 437 78.7
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 2.1e-208 729.2 439 77.0
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 2.7e-208 728.8 433 79.2
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 4.6e-208 728.0 438 78.3
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 4.6e-208 728.0 436 78.2
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 7.9e-208 727.2 439 78.4
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 1.0e-207 726.9 420 82.4
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.8e-207 726.1 430 79.1
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.3e-207 725.7 441 77.6
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 3.0e-207 725.3 439 77.2
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 3.9e-207 724.9 438 78.5
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 3.9e-207 724.9 438 76.7
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 3.9e-207 724.9 431 78.0
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 6.7e-207 724.2 435 77.7
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.5e-206 723.0 432 77.8
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 1.9e-206 722.6 435 77.9
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 1.9e-206 722.6 431 77.7
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 7.4e-206 720.7 438 77.4
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.6e-205 719.5 438 76.9
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 3.6e-205 718.4 439 77.4
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.8e-204 716.1 439 75.9
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 5.3e-204 714.5 436 77.3
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 9.0e-204 713.8 440 75.9
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 1.2e-203 713.4 437 76.2
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.2e-203 713.4 458 74.0
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.6e-203 712.2 452 75.0
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 3.4e-203 711.8 426 78.2
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 3.4e-203 711.8 438 75.6
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 3.4e-203 711.8 421 80.8
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 5.8e-203 711.1 437 76.0
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 7.6e-203 710.7 438 76.3
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 7.6e-203 710.7 437 76.0
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 4.9e-202 708.0 442 76.9
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 6.4e-202 707.6 442 73.8
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 1.9e-201 706.1 438 75.8
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 2.4e-201 705.7 442 74.7
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 3.2e-201 705.3 431 75.9
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 9.3e-201 703.7 421 79.8
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.2e-200 703.4 448 74.1
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.2e-200 703.4 438 75.3
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 2.1e-200 702.6 438 74.9
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 2.1e-200 702.6 428 76.4
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 4.6e-200 701.4 441 74.1
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 4.6e-200 701.4 439 73.8
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 1.0e-199 700.3 437 75.5
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.8e-199 699.5 438 76.3
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.8e-197 692.2 453 75.5
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 4.8e-197 691.4 417 78.7
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.4e-196 689.9 424 76.7
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 3.1e-196 688.7 395 80.8
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 4.0e-196 688.3 435 75.6
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.5e-195 686.4 431 74.0
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.6e-195 684.1 464 71.8
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.7e-194 682.9 435 75.2
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.1e-193 680.2 448 73.7
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 3.2e-193 678.7 417 75.3
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 3.5e-192 675.2 421 76.7
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.8e-191 672.9 431 72.6
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 5.1e-191 671.4 414 75.1
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.4e-188 663.3 431 71.2
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 2.4e-188 662.5 473 70.2
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 5.1e-183 644.8 421 75.3
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 3.7e-181 638.6 435 69.0
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 5.3e-180 634.8 495 64.0
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 2.0e-179 632.9 407 73.5
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 3.3e-174 615.5 480 62.5
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 1.3e-173 613.6 447 67.8
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.7e-173 613.2 438 65.3
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 7.7e-171 604.4 393 73.5
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 2.9e-170 602.4 360 80.6
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 1.4e-167 593.6 540 58.7
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 6.3e-165 584.7 434 66.8
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 7.0e-164 581.3 364 76.6
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 7.7e-163 577.8 375 72.3
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 5.0e-162 575.1 439 64.9
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 5.9e-155 551.6 438 61.0
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 2.2e-154 549.7 440 58.0
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.1e-153 547.4 438 62.3
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 2.3e-151 539.7 463 57.5
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.1e-148 529.3 469 57.1
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.1e-148 529.3 435 57.7
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.4e-143 513.8 421 60.3
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.1e-140 504.2 430 56.0
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 2.0e-134 483.4 443 53.7
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 2.2e-125 453.4 410 54.4
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.7e-122 443.7 270 76.7
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 8.6e-114 414.8 248 76.2
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 8.4e-109 398.3 244 80.3
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 1.1e-100 371.3 385 45.2
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 1.6e-99 367.5 450 43.1
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.1e-97 361.3 195 83.6
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.4e-95 354.4 196 80.6
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 1.8e-95 354.0 243 73.7
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 2.6e-94 350.1 272 64.3
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 3.2e-92 343.2 516 36.6
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 6.1e-67 259.2 171 73.7
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.1e-60 238.4 198 61.6
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.9e-53 213.8 233 48.1
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 2.8e-48 197.2 417 31.7
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 6.3e-48 196.1 184 53.3
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.1e-47 195.3 244 44.3
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 2.5e-44 184.1 145 60.0
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 9.4e-44 182.2 152 59.9
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 1.2e-43 181.8 94 81.9
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 2.8e-40 170.6 187 47.6
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 6.3e-40 169.5 108 68.5
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 6.5e-37 159.5 132 56.1
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 4.4e-33 146.7 93 69.9
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 5.7e-33 146.4 142 52.1
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 2.2e-32 144.4 125 60.0
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 2.2e-32 144.4 86 73.3
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 8.6e-29 132.5 106 61.3
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 1.2e-27 128.6 173 42.8
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 7.8e-22 109.4 126 46.0
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.0e-21 109.0 95 55.8
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 3.1e-18 97.4 63 69.8
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 7.5e-17 92.8 67 71.6
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 2.3e-13 81.3 65 66.2
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 3.3e-12 77.4 67 55.2
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.1e-11 74.7 43 74.4
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 5.2e-10 70.1 82 48.8
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 1.5e-09 68.6 55 63.6
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 1.5e-09 68.6 55 63.6
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 3.4e-09 67.4 53 64.2
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 3.7e-08 63.9 47 61.7
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 4.6e-06 57.0 35 68.6


User provided reference genes

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