Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 8.5e-175 617.1 352 100.0
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 1.0e-140 503.8 352 72.7
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 4.9e-138 495.0 352 82.1
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 2.0e-131 473.0 352 68.5
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 8.3e-130 467.6 354 71.8
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 4.6e-128 461.8 370 66.5
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.1e-126 457.2 354 66.4
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 1.9e-126 456.4 354 67.2
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 2.8e-125 452.6 355 65.9
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 3.4e-123 445.7 354 63.6
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 7.1e-121 438.0 355 65.1
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 2.7e-120 436.0 352 62.5
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.0e-119 434.1 357 62.2
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 2.3e-119 433.0 356 63.2
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 2.3e-119 433.0 364 67.0
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 6.6e-119 431.4 404 57.4
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 6.6e-119 431.4 357 61.9
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 5.6e-118 428.3 356 62.1
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 9.6e-118 427.6 405 57.5
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 1.6e-117 426.8 403 57.3
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 2.8e-117 426.0 339 65.2
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 3.6e-117 425.6 357 61.3
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.1e-116 424.1 402 57.0
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 3.4e-115 419.1 365 60.0
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 2.2e-114 416.4 375 60.3
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 2.2e-114 416.4 355 62.3
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 2.9e-114 416.0 411 55.2
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 2.9e-114 416.0 352 61.1
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 3.8e-114 415.6 355 62.3
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 8.4e-114 414.5 352 60.8
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.1e-113 414.1 352 60.8
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 1.4e-113 413.7 355 60.0
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 1.4e-113 413.7 354 61.0
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 4.2e-113 412.1 354 60.5
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 4.2e-113 412.1 355 61.4
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 7.1e-113 411.4 396 54.5
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 2.1e-112 409.8 355 61.1
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 2.7e-112 409.5 354 60.7
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 7.8e-112 407.9 349 59.9
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 7.8e-112 407.9 350 60.9
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.0e-111 407.5 382 56.0
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 1.3e-111 407.1 408 53.9
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 2.3e-111 406.4 317 64.7
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 3.0e-111 406.0 350 60.0
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.1e-110 404.1 354 59.3
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.6e-109 400.2 354 57.6
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 2.8e-109 399.4 355 59.4
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 2.8e-109 399.4 416 52.9
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 4.8e-109 398.7 359 58.5
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 6.2e-109 398.3 354 68.9
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 1.4e-108 397.1 350 58.6
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.4e-108 397.1 357 66.4
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 5.3e-108 395.2 354 59.3
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 9.0e-108 394.4 358 67.9
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 3.4e-107 392.5 349 68.2
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 3.4e-107 392.5 351 58.7
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 5.8e-107 391.7 445 50.3
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.7e-106 390.2 342 58.8
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 2.2e-106 389.8 376 55.9
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 4.9e-106 388.7 396 54.5
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 6.4e-106 388.3 343 58.3
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.1e-105 387.5 356 57.0
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.9e-105 386.7 355 57.5
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 2.4e-105 386.3 394 53.0
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 3.2e-105 386.0 394 53.0
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 4.2e-105 385.6 342 58.8
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 4.2e-105 385.6 398 52.5
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 7.1e-105 384.8 298 66.4
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.6e-104 383.6 342 58.5
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 2.1e-104 383.3 390 53.3
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 1.0e-103 380.9 396 51.8
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 1.0e-103 380.9 407 51.6
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 5.1e-103 378.6 394 52.8
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 5.1e-103 378.6 406 50.2
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 6.6e-103 378.3 377 53.8
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 1.5e-102 377.1 366 55.2
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 1.5e-102 377.1 404 52.2
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 1.9e-102 376.7 402 51.0
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.5e-102 376.3 337 68.5
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 3.3e-102 375.9 404 51.7
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 5.6e-102 375.2 401 50.9
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.6e-102 375.2 337 68.0
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 7.4e-102 374.8 337 68.0
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 9.6e-102 374.4 349 55.6
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.6e-102 374.4 337 68.0
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 1.6e-101 373.6 401 50.6
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 2.8e-101 372.9 404 50.7
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.8e-101 372.1 337 68.2
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 1.1e-100 370.9 392 52.0
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 1.1e-100 370.9 392 52.0
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 1.1e-100 370.9 451 47.2
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.4e-100 370.5 342 57.3
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.8e-100 370.2 339 56.6
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 3.1e-100 369.4 375 53.9
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 5.3e-100 368.6 402 50.0
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 1.2e-99 367.5 353 55.2
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 2.6e-99 366.3 318 58.5
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 4.5e-99 365.5 360 57.2
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 3.2e-97 359.4 349 63.9
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 6.0e-96 355.1 349 55.0
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 3.3e-94 349.4 309 59.2
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.4e-92 344.0 366 49.5
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 1.8e-92 343.6 370 51.6
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 4.0e-92 342.4 355 53.5
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 6.7e-87 325.1 213 76.1
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 8.7e-87 324.7 365 49.9
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 4.5e-83 312.4 291 56.0
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 4.5e-83 312.4 291 56.0
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 1.8e-76 290.4 356 45.8
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 3.1e-76 289.7 235 61.7
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.5e-75 287.3 352 49.1
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 2.0e-75 287.0 308 49.0
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 7.9e-72 275.0 214 64.5
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 4.3e-70 269.2 361 42.7
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 4.3e-70 269.2 270 54.4
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 8.2e-69 265.0 216 61.1
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.5e-67 260.8 311 44.7
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 4.7e-56 222.6 255 48.2
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.4e-52 211.1 150 70.0
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 7.7e-43 178.7 160 58.8
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 4.2e-41 172.9 383 33.4
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.7e-29 134.4 79 81.0
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 1.4e-28 131.3 149 47.7
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.2e-27 128.3 140 48.6
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.8e-22 109.4 128 46.1
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 1.6e-16 91.3 124 41.1
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.4e-15 88.2 115 42.6
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 8.3e-13 79.0 61 63.9
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.2e-11 75.1 142 35.2
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 4.7e-08 63.2 72 44.4
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 1.8e-07 61.2 281 21.0
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 1.8e-07 61.2 43 69.8
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 2.0e-06 57.8 50 56.0


User provided reference genes

Program Settings