Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23045 Striga asiatica HOM05D018425 ORTHO05D017180 1.5e-89 332.8 164 100.0
SGA_v2.0_scaffold105G30512 Striga asiatica HOM05D018425 ORTHO05D017180 7.8e-38 161.0 207 47.3
MSTRG.19924 Avicennia marina HOM05D018425 ORTHO05D017180 4.6e-30 135.2 108 61.1
Migut.J01863 Erythranthe guttata HOM05D018425 ORTHO05D017180 1.2e-25 120.6 81 65.4
SalBow6G0218 Salvia bowleyana HOM05D018425 ORTHO05D017180 3.3e-20 102.4 68 67.6
Dinv16346 Davidia involucrata HOM05D014763 ORTHO05D017180 4.6e-14 82.0 47 70.2
Actinidia22062 Actinidia chinensis HOM05D014763 ORTHO05D017180 7.8e-14 81.3 64 54.7
DCAR_026559 Daucus carota HOM05D001250 ORTHO05D000627 8.4e-08 61.2 75 38.7
Sed0006952 Sechium edule HOM05D000333 ORTHO05D000190 1.1e-07 60.8 136 33.1
CDE05G0332 Ceratophyllum demersum HOM05D003047 ORTHO05D000627 1.4e-07 60.5 74 43.2
Solyc06g068390.1 Solanum lycopersicum HOM05D000333 ORTHO05D000190 1.9e-07 60.1 137 32.8
PSO832G4141 Papaver somniferum HOM05D001250 ORTHO05D000627 2.4e-07 59.7 81 37.0
CARHR026440 Cardamine hirsuta HOM05D000333 ORTHO05D000190 3.2e-07 59.3 152 32.9
CiPaw.06G075500 Carya illinoinensis HOM05D001250 ORTHO05D000627 4.2e-07 58.9 90 31.1
Dinv24910 Davidia involucrata HOM05D001250 ORTHO05D000627 5.4e-07 58.5 68 42.6
Lalb_Chr10g0104181 Lupinus albus HOM05D000333 ORTHO05D000190 5.4e-07 58.5 154 33.1
unitig_699.g19440 Utricularia gibba HOM05D018425 ORTHO05D017180 5.4e-07 58.5 146 33.6
Aqoxy3G04021 Aquilegia oxysepala HOM05D000333 ORTHO05D000190 7.1e-07 58.2 129 34.1
DCAR_020843 Daucus carota HOM05D018425 ORTHO05D017180 7.1e-07 58.2 53 39.6
Dinv35024 Davidia involucrata HOM05D001250 ORTHO05D000627 7.1e-07 58.2 37 59.5
Lsat_1_v5_gn_3_49580 Lactuca sativa HOM05D001250 ORTHO05D000627 7.1e-07 58.2 50 48.0
Oeu012246.1 Olea europaea HOM05D001250 ORTHO05D000627 7.1e-07 58.2 65 35.4
Peaxi162Scf01141g00013 Petunia axillaris HOM05D001250 ORTHO05D000627 7.1e-07 58.2 78 35.9
Potri.002G199200 Populus trichocarpa HOM05D001250 ORTHO05D000627 7.1e-07 58.2 139 29.5
unitig_46.g18697 Utricularia gibba HOM05D001250 ORTHO05D000627 7.1e-07 58.2 132 32.6
Migut.K00023 Erythranthe guttata HOM05D003047 ORTHO05D000627 9.3e-07 57.8 80 37.5
PSO591G0228 Papaver somniferum HOM05D001250 ORTHO05D000627 9.3e-07 57.8 81 35.8
Duzib211G0582 Durio zibethinus HOM05D001250 ORTHO05D000627 1.2e-06 57.4 93 35.5
Medtr2g067740 Medicago truncatula HOM05D000333 ORTHO05D000190 1.2e-06 57.4 73 45.2
Nn3g16998 Nelumbo nucifera HOM05D001250 ORTHO05D000627 1.2e-06 57.4 68 38.2
Potri.010G036400 Populus trichocarpa HOM05D001250 ORTHO05D000627 1.2e-06 57.4 74 37.8
PGR102G3337 Punica granatum HOM05D001250 ORTHO05D000627 1.2e-06 57.4 38 55.3
ATR0598G083 Amborella trichopoda HOM05D003047 ORTHO05D000627 1.6e-06 57.0 68 39.7
Aqoxy3G03102 Aquilegia oxysepala HOM05D001250 ORTHO05D000627 1.6e-06 57.0 50 48.0
BcaB03g14016 Brassica carinata HOM05D000333 ORTHO05D000190 1.6e-06 57.0 154 31.2
CSS0048728 Camellia sinensis var. sinensis HOM05D001250 ORTHO05D000627 1.6e-06 57.0 56 41.1
CiPaw.05G145900 Carya illinoinensis HOM05D001250 ORTHO05D000627 1.6e-06 57.0 75 37.3
Duzib248G0418 Durio zibethinus HOM05D001250 ORTHO05D000627 1.6e-06 57.0 66 39.4
Lj2g0019425 Lotus japonicus HOM05D001250 ORTHO05D000627 1.6e-06 57.0 88 35.2
MD13G1086000 Malus domestica HOM05D001250 ORTHO05D000627 1.6e-06 57.0 83 33.7
Nn4g22907 Nelumbo nucifera HOM05D001250 ORTHO05D000627 1.6e-06 57.0 44 52.3
Nn4g24490 Nelumbo nucifera HOM05D000333 ORTHO05D000190 1.6e-06 57.0 140 30.0
TWI18G0415 Tripterygium wilfordii HOM05D001250 ORTHO05D000627 1.6e-06 57.0 94 34.0
TWI75G0118 Tripterygium wilfordii HOM05D001250 ORTHO05D000627 1.6e-06 57.0 42 50.0
TWI75G0561 Tripterygium wilfordii HOM05D001250 ORTHO05D000627 1.6e-06 57.0 42 50.0
TWI75G1804 Tripterygium wilfordii HOM05D001250 ORTHO05D000627 1.6e-06 57.0 42 50.0
TAR371G0161 Trochodendron aralioides HOM05D001250 ORTHO05D000627 1.6e-06 57.0 65 44.6
Aa31sc291G10 Aethionema arabicum HOM05D003047 ORTHO05D000627 2.1e-06 56.6 58 39.7
Duzib251G0809 Durio zibethinus HOM05D000333 ORTHO05D000190 2.1e-06 56.6 147 30.6
Eucgr.B02564 Eucalyptus grandis HOM05D001250 ORTHO05D000627 2.1e-06 56.6 37 59.5
Gohir.A03G143001 Gossypium hirsutum HOM05D001250 ORTHO05D000627 2.1e-06 56.6 86 31.4
Gohir.D02G166300 Gossypium hirsutum HOM05D001250 ORTHO05D000627 2.1e-06 56.6 86 31.4
Gohir.D12G147000 Gossypium hirsutum HOM05D001250 ORTHO05D000627 2.1e-06 56.6 54 40.7
Gorai.005G186400 Gossypium raimondii HOM05D001250 ORTHO05D000627 2.1e-06 56.6 86 31.4
Gorai.008G158200 Gossypium raimondii HOM05D001250 ORTHO05D000627 2.1e-06 56.6 54 40.7
HanXRQChr08g0209051 Helianthus annuus HOM05D001250 ORTHO05D000627 2.1e-06 56.6 83 39.8
Hma1.2p1_0160F.1_g070570 Hydrangea macrophylla HOM05D001250 ORTHO05D000627 2.1e-06 56.6 47 48.9
Hma1.2p1_1049F.1_g251840 Hydrangea macrophylla HOM05D001250 ORTHO05D000627 2.1e-06 56.6 54 46.3
Sabra10G0028700 Salix brachista HOM05D001250 ORTHO05D000627 2.1e-06 56.6 75 37.3
SGA_v2.0_scaffold166G38329 Striga asiatica HOM05D001250 ORTHO05D000627 2.1e-06 56.6 68 38.2
CAN.G159.18 Capsicum annuum HOM05D001250 ORTHO05D000627 2.7e-06 56.2 64 42.2
CAN.G960.17 Capsicum annuum HOM05D003047 ORTHO05D000627 2.7e-06 56.2 87 31.0
AUR62030826 Chenopodium quinoa HOM05D000333 ORTHO05D001954 2.7e-06 56.2 69 43.5
Glyma.01G036600 Glycine max HOM05D001250 ORTHO05D000627 2.7e-06 56.2 60 38.3
Hma1.2p1_1450F.1_g284230 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 2.7e-06 56.2 163 28.2
Lju124C22T4 Lonicera japonica HOM05D003047 ORTHO05D000627 2.7e-06 56.2 57 42.1
MBI13_g29637_MAGBIO Magnolia biondii HOM05D003047 ORTHO05D000627 2.7e-06 56.2 42 50.0
Manes.01G196000 Manihot esculenta HOM05D001250 ORTHO05D000627 2.7e-06 56.2 66 39.4
Oeu026673.1 Olea europaea HOM05D001250 ORTHO05D000627 2.7e-06 56.2 66 40.9
Sed0017358 Sechium edule HOM05D003047 ORTHO05D000627 2.7e-06 56.2 73 38.4
Sopen06g025650 Solanum pennellii HOM05D000333 ORTHO05D000190 2.7e-06 56.2 133 30.8
SGA_v2.0_scaffold274G46500 Striga asiatica HOM05D003047 ORTHO05D000627 2.7e-06 56.2 81 34.6
TAR374G0543 Trochodendron aralioides HOM05D001250 ORTHO05D000627 2.7e-06 56.2 41 51.2
TAR622G0054 Trochodendron aralioides HOM05D001250 ORTHO05D000627 2.7e-06 56.2 66 39.4
TAR629G2542 Trochodendron aralioides HOM05D001250 ORTHO05D000627 2.7e-06 56.2 56 46.4
GSVIVG01020155001 Vitis vinifera HOM05D001250 ORTHO05D000627 2.7e-06 56.2 59 42.4
EL10Ac6g13753 Beta vulgaris HOM05D001250 ORTHO05D000627 3.5e-06 55.8 41 48.8
Cpa.g.sc116.88 Carica papaya HOM05D000333 ORTHO05D000190 3.5e-06 55.8 165 29.1
Thhalv10009495m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 3.5e-06 55.8 153 30.7
Glyma.10G101900 Glycine max HOM05D000333 ORTHO05D000190 3.5e-06 55.8 32 71.9
Lsat_1_v5_gn_8_160440 Lactuca sativa HOM05D001250 ORTHO05D000627 3.5e-06 55.8 50 50.0
MD16G1085400 Malus domestica HOM05D001250 ORTHO05D000627 3.5e-06 55.8 84 34.5
Peaxi162Scf00249g00111 Petunia axillaris HOM05D003047 ORTHO05D000627 3.5e-06 55.8 50 42.0
Psat6g134440 Pisum sativum HOM05D010505 ORTHO05D012796 3.5e-06 55.8 59 49.2
unitig_21.g20729 Utricularia gibba HOM05D000333 ORTHO05D000190 3.5e-06 55.8 53 54.7
Actinidia08184 Actinidia chinensis HOM05D001250 ORTHO05D000627 4.6e-06 55.5 66 37.9
AL1G40270 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 4.6e-06 55.5 151 31.8
FvH4_4g35130 Fragaria vesca HOM05D001250 ORTHO05D000627 4.6e-06 55.5 41 48.8
FAN07G0319 Fragaria x ananassa HOM05D001250 ORTHO05D000627 4.6e-06 55.5 41 48.8
FAN12G1641 Fragaria x ananassa HOM05D001250 ORTHO05D000627 4.6e-06 55.5 41 48.8
FAN17G0792 Fragaria x ananassa HOM05D001250 ORTHO05D000627 4.6e-06 55.5 41 48.8
FAN22G0402 Fragaria x ananassa HOM05D001250 ORTHO05D000627 4.6e-06 55.5 41 48.8
Nitab4.5_0006492g0010 Nicotiana tabacum HOM05D001250 ORTHO05D000627 4.6e-06 55.5 84 35.7
Oeu017600.1 Olea europaea HOM05D001250 ORTHO05D000627 4.6e-06 55.5 75 37.3
Peaxi162Scf00016g00251 Petunia axillaris HOM05D000333 ORTHO05D000190 4.6e-06 55.5 72 48.6
Peaxi162Scf00363g00082 Petunia axillaris HOM05D003047 ORTHO05D000627 4.6e-06 55.5 77 36.4
Sed0006876 Sechium edule HOM05D000333 ORTHO05D000190 4.6e-06 55.5 122 31.1
SMO356G0172 Selaginella moellendorffii HOM05D058479 ORTHO05D000190 4.6e-06 55.5 35 62.9
PGSC0003DMG400011450 Solanum tuberosum HOM05D003047 ORTHO05D000627 4.6e-06 55.5 61 39.3
VMungo1215G1309 Vigna mungo HOM05D001250 ORTHO05D000627 4.6e-06 55.5 57 40.4
Atru.chr6.2625 Acer truncatum HOM05D000333 ORTHO05D000190 6.0e-06 55.1 80 37.5
MSTRG.7865 Avicennia marina HOM05D001250 ORTHO05D000627 6.0e-06 55.1 40 55.0
CSS0004638 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 6.0e-06 55.1 60 46.7
CSS0019313 Camellia sinensis var. sinensis HOM05D001250 ORTHO05D000627 6.0e-06 55.1 37 59.5
Cpa.g.sc5.339 Carica papaya HOM05D001250 ORTHO05D000627 6.0e-06 55.1 73 38.4
Ciclev10032466m.g Citrus clementina HOM05D001250 ORTHO05D000627 6.0e-06 55.1 37 54.1
Haze_12128 Corylus avellana HOM05D001250 ORTHO05D000627 6.0e-06 55.1 37 54.1
Duzib251G0738 Durio zibethinus HOM05D001250 ORTHO05D000627 6.0e-06 55.1 37 54.1
Duzib268G1574 Durio zibethinus HOM05D001250 ORTHO05D000627 6.0e-06 55.1 37 54.1
HanXRQChr12g0371271 Helianthus annuus HOM05D001250 ORTHO05D000627 6.0e-06 55.1 37 56.8
Lj4P256T29 Lonicera japonica HOM05D000333 ORTHO05D000190 6.0e-06 55.1 151 30.5
MBI19_g17431_MAGBIO Magnolia biondii HOM05D003047 ORTHO05D000627 6.0e-06 55.1 44 50.0
Manes.05G093100 Manihot esculenta HOM05D001250 ORTHO05D000627 6.0e-06 55.1 66 40.9
PSO339G6230 Papaver somniferum HOM05D014763 ORTHO05D015759 6.0e-06 55.1 93 32.3
Phvul.002G075900 Phaseolus vulgaris HOM05D001250 ORTHO05D000627 6.0e-06 55.1 47 44.7
Prupe.1G260700 Prunus persica HOM05D001250 ORTHO05D000627 6.0e-06 55.1 37 54.1
Rhsim12G0050500 Rhododendron simsii HOM05D001250 ORTHO05D000627 6.0e-06 55.1 37 54.1
Sc11g0001400 Simmondsia chinensis HOM05D001250 ORTHO05D000627 6.0e-06 55.1 68 41.2
Sopen01g001150 Solanum pennellii HOM05D000333 ORTHO05D000190 6.0e-06 55.1 122 32.0
Sopen04g003260 Solanum pennellii HOM05D000333 ORTHO05D000190 6.0e-06 55.1 121 31.4
TPR.G13949 Trifolium pratense HOM05D001250 ORTHO05D000627 6.0e-06 55.1 37 54.1
unitig_0.g878 Utricularia gibba HOM05D000333 ORTHO05D000190 6.0e-06 55.1 57 49.1
GSVIVG01025803001 Vitis vinifera HOM05D000333 ORTHO05D000190 6.0e-06 55.1 89 36.0
Actinidia32415 Actinidia chinensis HOM05D003047 ORTHO05D000627 7.8e-06 54.7 74 35.1
EL10Ac9g22362 Beta vulgaris HOM05D000846 ORTHO05D006755 7.8e-06 54.7 35 60.0
CAN.G606.20 Capsicum annuum HOM05D000333 ORTHO05D000190 7.8e-06 54.7 61 50.8
ECA233G2104 Erigeron canadensis HOM05D003047 ORTHO05D000627 7.8e-06 54.7 70 31.4
Glyma.02G029400 Glycine max HOM05D001250 ORTHO05D000627 7.8e-06 54.7 90 31.1
Gohir.A04G053200 Gossypium hirsutum HOM05D003047 ORTHO05D000627 7.8e-06 54.7 77 33.8
Gohir.D04G090600 Gossypium hirsutum HOM05D003047 ORTHO05D000627 7.8e-06 54.7 77 33.8
Gorai.009G391500 Gossypium raimondii HOM05D003047 ORTHO05D000627 7.8e-06 54.7 77 33.8
HanXRQChr15g0476601 Helianthus annuus HOM05D001250 ORTHO05D000627 7.8e-06 54.7 53 43.4
Lj6P800T20 Lonicera japonica HOM05D001250 ORTHO05D000627 7.8e-06 54.7 45 48.9
Nitab4.5_0000257g0090 Nicotiana tabacum HOM05D001250 ORTHO05D000627 7.8e-06 54.7 37 54.1
Nitab4.5_0010523g0020 Nicotiana tabacum HOM05D001250 ORTHO05D000627 7.8e-06 54.7 37 54.1
Oeu057585.1 Olea europaea HOM05D003047 ORTHO05D000627 7.8e-06 54.7 71 40.8
PGR004G2322 Punica granatum HOM05D003047 ORTHO05D000627 7.8e-06 54.7 64 35.9
QL03p067113 Quercus lobata HOM05D001250 ORTHO05D000627 7.8e-06 54.7 73 37.0
QL07p002376 Quercus lobata HOM05D000333 ORTHO05D000190 7.8e-06 54.7 36 63.9
QL07p024739 Quercus lobata HOM05D003047 ORTHO05D000627 7.8e-06 54.7 77 35.1
Rhsim12G0125200 Rhododendron simsii HOM05D001250 ORTHO05D000627 7.8e-06 54.7 62 37.1
Sed0003295 Sechium edule HOM05D000333 ORTHO05D000190 7.8e-06 54.7 88 39.8
Sed0027507 Sechium edule HOM05D001250 ORTHO05D000627 7.8e-06 54.7 60 38.3
Solyc01g005130.2 Solanum lycopersicum HOM05D000333 ORTHO05D000190 7.8e-06 54.7 128 32.0
Sopen10g031140 Solanum pennellii HOM05D003047 ORTHO05D000627 7.8e-06 54.7 109 33.9
PGSC0003DMG400022772 Solanum tuberosum HOM05D000333 ORTHO05D000190 7.8e-06 54.7 126 30.2
unitig_744.g24223 Utricularia gibba HOM05D000333 ORTHO05D000190 7.8e-06 54.7 54 50.0
HPP92_017344 Vanilla planifolia HOM05D001250 ORTHO05D000627 7.8e-06 54.7 61 42.6
HPP92_017351 Vanilla planifolia HOM05D001250 ORTHO05D000627 7.8e-06 54.7 61 42.6
VMungo0978G0001 Vigna mungo HOM05D000333 ORTHO05D000190 7.8e-06 54.7 32 68.8


User provided reference genes

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