Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold68G23012 Striga asiatica HOM05D060986 ORTHO05D036440 1.5e-80 302.8 150 100.0
SGA_v2.0_scaffold90G27607 Striga asiatica HOM05D060986 ORTHO05D036440 4.8e-26 121.7 172 47.1
SGA_v2.0_scaffold195G40835 Striga asiatica HOM05D000640 ORTHO05D004274 6.1e-13 78.2 66 59.1
SGA_v2.0_scaffold548G52855 Striga asiatica HOM05D000640 ORTHO05D004274 7.9e-13 77.8 66 60.6
Migut.K00774 Erythranthe guttata HOM05D000640 ORTHO05D004274 1.0e-12 77.4 66 62.1
Migut.H02313 Erythranthe guttata HOM05D000640 ORTHO05D004274 1.1e-11 73.9 66 56.1
Oeu000867.2 Olea europaea HOM05D000640 ORTHO05D004274 2.5e-11 72.8 66 56.1
Atru.chr3.1298 Acer truncatum HOM05D000640 ORTHO05D004274 3.3e-11 72.4 66 54.5
CiPaw.01G047300 Carya illinoinensis HOM05D000640 ORTHO05D004274 3.3e-11 72.4 66 57.6
Ciclev10025337m.g Citrus clementina HOM05D000640 ORTHO05D004274 3.3e-11 72.4 65 53.8
Gohir.A02G130900 Gossypium hirsutum HOM05D000640 ORTHO05D004274 3.3e-11 72.4 66 54.5
Gohir.D03G042200 Gossypium hirsutum HOM05D000640 ORTHO05D004274 3.3e-11 72.4 66 54.5
Gorai.003G042800 Gossypium raimondii HOM05D000640 ORTHO05D004274 3.3e-11 72.4 66 54.5
Prupe.6G196200 Prunus persica HOM05D000640 ORTHO05D004274 4.3e-11 72.0 66 54.5
MBI02_g18286_MAGBIO Magnolia biondii HOM05D000640 ORTHO05D004274 5.7e-11 71.6 66 56.1
ATR0564G424 Amborella trichopoda HOM05D000640 ORTHO05D004274 9.7e-11 70.9 66 54.5
Thecc.01G092600 Theobroma cacao HOM05D000640 ORTHO05D004274 9.7e-11 70.9 66 53.0
CDE09G1266 Ceratophyllum demersum HOM05D000640 ORTHO05D004274 1.3e-10 70.5 66 53.0
TAR628G0077 Trochodendron aralioides HOM05D000640 ORTHO05D004274 1.3e-10 70.5 66 53.0
MSTRG.23367 Avicennia marina HOM05D000640 ORTHO05D004274 2.2e-10 69.7 64 54.7
Lalb_Chr05g0216491 Lupinus albus HOM05D000640 ORTHO05D004274 2.2e-10 69.7 66 56.1
Oeu055136.2 Olea europaea HOM05D000640 ORTHO05D004274 2.2e-10 69.7 64 56.2
RcHm_v2.0_Chr2g0111921 Rosa chinensis HOM05D000640 ORTHO05D004274 2.2e-10 69.7 66 54.5
ClCG10G008720 Citrullus lanatus HOM05D000640 ORTHO05D004274 2.8e-10 69.3 66 54.5
Lj4g0017425 Lotus japonicus HOM05D000640 ORTHO05D004274 2.8e-10 69.3 66 54.5
arahy.Tifrunner.gnm1.ann1.AC1ID1 Arachis hypogaea HOM05D000640 ORTHO05D004274 3.7e-10 68.9 66 53.0
Dinv13625 Davidia involucrata HOM05D000640 ORTHO05D004274 3.7e-10 68.9 96 42.7
Duzib147G1393 Durio zibethinus HOM05D000640 ORTHO05D004274 3.7e-10 68.9 66 51.5
Hma1.2p1_0045F.1_g026420 Hydrangea macrophylla HOM05D000640 ORTHO05D004274 3.7e-10 68.9 66 51.5
MD01G1037400 Malus domestica HOM05D000640 ORTHO05D004274 3.7e-10 68.9 66 51.5
MD15G1315500 Malus domestica HOM05D000640 ORTHO05D004274 3.7e-10 68.9 66 53.0
arahy.Tifrunner.gnm1.ann1.TJHX2R Arachis hypogaea HOM05D000640 ORTHO05D004274 4.8e-10 68.6 65 53.8
arahy.Tifrunner.gnm1.ann1.VE9EQN Arachis hypogaea HOM05D000640 ORTHO05D004274 4.8e-10 68.6 65 53.8
MELO3C018966.2 Cucumis melo HOM05D000640 ORTHO05D004274 4.8e-10 68.6 66 53.0
CsaV3_4G008960 Cucumis sativus L. HOM05D000640 ORTHO05D004274 4.8e-10 68.6 66 53.0
FvH4_1g19980 Fragaria vesca HOM05D000640 ORTHO05D004274 4.8e-10 68.6 66 51.5
FAN19G1203 Fragaria x ananassa HOM05D000640 ORTHO05D004274 4.8e-10 68.6 66 51.5
FAN23G0052 Fragaria x ananassa HOM05D000640 ORTHO05D004274 4.8e-10 68.6 66 51.5
Lj2C537G2 Lonicera japonica HOM05D000640 ORTHO05D004274 4.8e-10 68.6 69 53.6
MBI02_g39063_MAGBIO Magnolia biondii HOM05D000640 ORTHO05D004274 4.8e-10 68.6 66 50.0
GSVIVG01003611001 Vitis vinifera HOM05D000640 ORTHO05D004274 4.8e-10 68.6 84 44.0
GSVIVG01003613001 Vitis vinifera HOM05D000640 ORTHO05D004274 4.8e-10 68.6 72 48.6
Cpa.g.sc55.34 Carica papaya HOM05D000640 ORTHO05D004274 6.3e-10 68.2 66 53.0
FAN26G1057 Fragaria x ananassa HOM05D000640 ORTHO05D004274 6.3e-10 68.2 66 51.5
Nn3g17222 Nelumbo nucifera HOM05D000640 ORTHO05D004274 6.3e-10 68.2 66 51.5
Lj2g0019493 Lotus japonicus HOM05D000640 ORTHO05D004274 8.2e-10 67.8 66 53.0
Manes.12G128200 Manihot esculenta HOM05D000640 ORTHO05D004274 8.2e-10 67.8 64 54.7
Actinidia30842 Actinidia chinensis HOM05D000640 ORTHO05D004274 1.1e-09 67.4 66 51.5
CSS0033468 Camellia sinensis var. sinensis HOM05D000640 ORTHO05D004274 1.1e-09 67.4 66 53.0
Lj4C271G9 Lonicera japonica HOM05D000640 ORTHO05D004274 1.1e-09 67.4 66 51.5
Lju188C0T0 Lonicera japonica HOM05D000640 ORTHO05D004274 1.1e-09 67.4 66 51.5
MBI05_g08279_MAGBIO Magnolia biondii HOM05D000640 ORTHO05D004274 1.1e-09 67.4 66 50.0
PSO478G2145 Papaver somniferum HOM05D000640 ORTHO05D004274 1.1e-09 67.4 66 51.5
Sed0015495 Sechium edule HOM05D000640 ORTHO05D004274 1.1e-09 67.4 66 53.0
unitig_899.g14558 Utricularia gibba HOM05D000640 ORTHO05D004274 1.1e-09 67.4 66 50.0
Nn5g29937 Nelumbo nucifera HOM05D000640 ORTHO05D004274 1.4e-09 67.0 66 51.5
QL06p047549 Quercus lobata HOM05D000640 ORTHO05D004274 1.4e-09 67.0 66 51.5
DCAR_003452 Daucus carota HOM05D000640 ORTHO05D004274 1.8e-09 66.6 66 51.5
Psat2g081160 Pisum sativum HOM05D000640 ORTHO05D004274 1.8e-09 66.6 66 53.0
vmacro12992 Vaccinium macrocarpon HOM05D000640 ORTHO05D004274 1.8e-09 66.6 66 51.5
FAN28G1634 Fragaria x ananassa HOM05D000640 ORTHO05D004274 2.4e-09 66.2 65 50.8
Nn4g23143 Nelumbo nucifera HOM05D000640 ORTHO05D004274 2.4e-09 66.2 66 47.0
Os09g0415800 Oryza sativa ssp. japonica HOM05D000640 ORTHO05D004274 2.4e-09 66.2 85 43.5
Rhsim10G0171500 Rhododendron simsii HOM05D000640 ORTHO05D004274 2.4e-09 66.2 66 51.5
THA.LOC104804170 Tarenaya hassleriana HOM05D000640 ORTHO05D004274 2.4e-09 66.2 64 51.6
Zm00001eb099530 Zea mays HOM05D000640 ORTHO05D004274 2.4e-09 66.2 66 50.0
arahy.Tifrunner.gnm1.ann1.1WNY7F Arachis hypogaea HOM05D000640 ORTHO05D004274 3.1e-09 65.9 96 41.7
CDE02G3788 Ceratophyllum demersum HOM05D000640 ORTHO05D004274 3.1e-09 65.9 66 51.5
Ca_25399_v3 Cicer arietinum L. HOM05D000640 ORTHO05D004274 3.1e-09 65.9 96 40.6
Cc07_g14330 Coffea canephora HOM05D000640 ORTHO05D004274 3.1e-09 65.9 64 51.6
Eucgr.I00555 Eucalyptus grandis HOM05D000640 ORTHO05D004274 3.1e-09 65.9 66 50.0
Ca_04541_v3 Cicer arietinum L. HOM05D000640 ORTHO05D004274 4.1e-09 65.5 66 54.5
Lsat_1_v5_gn_5_44641 Lactuca sativa HOM05D000640 ORTHO05D004274 4.1e-09 65.5 66 48.5
Lalb_Chr16g0392161 Lupinus albus HOM05D000640 ORTHO05D004274 4.1e-09 65.5 66 51.5
Medtr8g069040 Medicago truncatula HOM05D000640 ORTHO05D004274 4.1e-09 65.5 96 41.7
Psat4g116320 Pisum sativum HOM05D000640 ORTHO05D004274 4.1e-09 65.5 96 41.7
Sc03g0000280 Simmondsia chinensis HOM05D000640 ORTHO05D004274 4.1e-09 65.5 66 51.5
TPR.G14617 Trifolium pratense HOM05D000640 ORTHO05D004274 4.1e-09 65.5 96 41.7
CANSAT01G2559 Cannabis sativa HOM05D000640 ORTHO05D004274 5.3e-09 65.1 66 51.5
Glyma.08G280700 Glycine max HOM05D000640 ORTHO05D004274 5.3e-09 65.1 66 51.5
Glyma.18G145500 Glycine max HOM05D000640 ORTHO05D004274 5.3e-09 65.1 66 51.5
Lsat_1_v5_gn_2_70500 Lactuca sativa HOM05D000640 ORTHO05D004274 5.3e-09 65.1 64 50.0
VMungo0251G0351 Vigna mungo HOM05D000640 ORTHO05D004274 5.3e-09 65.1 66 51.5
PGR043G0003 Punica granatum HOM05D000640 ORTHO05D004274 6.9e-09 64.7 66 48.5
PGR083G2333 Punica granatum HOM05D000640 ORTHO05D004274 6.9e-09 64.7 66 48.5
Solyc11g010450.2 Solanum lycopersicum HOM05D000640 ORTHO05D004274 6.9e-09 64.7 66 50.0
Sopen11g005230 Solanum pennellii HOM05D000640 ORTHO05D004274 6.9e-09 64.7 66 50.0
Actinidia06528 Actinidia chinensis HOM05D000640 ORTHO05D004274 9.1e-09 64.3 66 51.5
COL.COLO4_27338 Corchorus olitorius HOM05D000640 ORTHO05D004274 9.1e-09 64.3 66 48.5
PSO017G3545 Papaver somniferum HOM05D000640 ORTHO05D004274 9.1e-09 64.3 66 50.0
HanXRQChr16g0518061 Helianthus annuus HOM05D000640 ORTHO05D004274 1.2e-08 63.9 66 48.5
Zm00001eb041270 Zea mays HOM05D000640 ORTHO05D004274 1.2e-08 63.9 85 42.4
Dinv33753 Davidia involucrata HOM05D000640 ORTHO05D004274 1.5e-08 63.5 66 48.5
Phvul.003G289600 Phaseolus vulgaris HOM05D000640 ORTHO05D004274 1.5e-08 63.5 66 50.0
Hund16545 Selenicereus undatus HOM05D000640 ORTHO05D004274 1.5e-08 63.5 66 50.0
BcaB08g35073 Brassica carinata HOM05D000640 ORTHO05D004274 2.0e-08 63.2 66 50.0
BcaC07g41065 Brassica carinata HOM05D000640 ORTHO05D004274 2.0e-08 63.2 66 50.0
A09p57530 Brassica napus HOM05D000640 ORTHO05D004274 2.0e-08 63.2 66 50.0
C08p40650 Brassica napus HOM05D000640 ORTHO05D004274 2.0e-08 63.2 66 50.0
BolC8t51631H Brassica oleracea HOM05D000640 ORTHO05D004274 2.0e-08 63.2 66 50.0
BraA09t41144Z Brassica rapa HOM05D000640 ORTHO05D004274 2.0e-08 63.2 66 50.0
CAN.G1388.6 Capsicum annuum HOM05D000640 ORTHO05D004274 2.0e-08 63.2 66 48.5
CiPaw.02G021600 Carya illinoinensis HOM05D000640 ORTHO05D004274 2.0e-08 63.2 66 53.0
ECA246G4420 Erigeron canadensis HOM05D000640 ORTHO05D004274 2.0e-08 63.2 66 47.0
EL10Ac6g14793 Beta vulgaris HOM05D000640 ORTHO05D004274 2.6e-08 62.8 66 50.0
Thhalv10000117m.g Eutrema salsugineum HOM05D000640 ORTHO05D004274 2.6e-08 62.8 66 48.5
Solyc04g014270.3 Solanum lycopersicum HOM05D000640 ORTHO05D004274 2.6e-08 62.8 66 48.5
Sopen04g006390 Solanum pennellii HOM05D000640 ORTHO05D004274 2.6e-08 62.8 66 48.5
PGSC0003DMG402023631 Solanum tuberosum HOM05D000640 ORTHO05D004274 2.6e-08 62.8 66 48.5
HPP92_005774 Vanilla planifolia HOM05D000640 ORTHO05D004274 2.6e-08 62.8 66 48.5
GSVIVG01011393001 Vitis vinifera HOM05D000640 ORTHO05D004274 2.6e-08 62.8 66 48.5
Lsat_1_v5_gn_8_95521 Lactuca sativa HOM05D000640 ORTHO05D036440 3.4e-08 62.4 69 47.8
Sabra07G0007800 Salix brachista HOM05D000640 ORTHO05D004274 3.4e-08 62.4 70 47.1
Sp4g01500 Schrenkiella parvula HOM05D000640 ORTHO05D004274 3.4e-08 62.4 65 49.2
PGSC0003DMG400016208 Solanum tuberosum HOM05D000640 ORTHO05D004274 3.4e-08 62.4 66 48.5
TWI53G0564 Tripterygium wilfordii HOM05D000640 ORTHO05D004274 3.4e-08 62.4 96 39.6
CSS0028623 Camellia sinensis var. sinensis HOM05D000640 ORTHO05D004274 4.5e-08 62.0 66 47.0
Cfa004357 Carpinus fangiana HOM05D000640 ORTHO05D004274 4.5e-08 62.0 64 50.0
Glyma.01G024800 Glycine max HOM05D000640 ORTHO05D004274 4.5e-08 62.0 66 50.0
Potri.007G010300 Populus trichocarpa HOM05D000640 ORTHO05D004274 4.5e-08 62.0 66 48.5
Nitab4.5_0000902g0100 Nicotiana tabacum HOM05D000640 ORTHO05D004274 5.9e-08 61.6 66 48.5
Nitab4.5_0001122g0150 Nicotiana tabacum HOM05D000640 ORTHO05D004274 5.9e-08 61.6 66 48.5
Peaxi162Scf00569g00013 Petunia axillaris HOM05D000640 ORTHO05D004274 5.9e-08 61.6 66 48.5
TPR.G29975 Trifolium pratense HOM05D000640 ORTHO05D004274 7.7e-08 61.2 66 50.0
HPP92_005817 Vanilla planifolia HOM05D000640 ORTHO05D004274 1.0e-07 60.8 66 47.0
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.0e-07 60.8 66 47.0
Ah.03g141840 Amaranthus hybridus HOM05D000640 ORTHO05D004274 1.3e-07 60.5 67 49.3
AL4G12000 Arabidopsis lyrata HOM05D000640 ORTHO05D004274 1.3e-07 60.5 66 47.0
AT2G22480 Arabidopsis thaliana HOM05D000640 ORTHO05D004274 1.3e-07 60.5 66 47.0
BcaB03g12305 Brassica carinata HOM05D000640 ORTHO05D004274 1.3e-07 60.5 64 50.0
VMungo1215G1570 Vigna mungo HOM05D000640 ORTHO05D004274 1.3e-07 60.5 66 50.0
CARHR113680 Cardamine hirsuta HOM05D000640 ORTHO05D004274 1.7e-07 60.1 66 45.5
TAR374G1098 Trochodendron aralioides HOM05D000640 ORTHO05D004274 1.7e-07 60.1 66 47.0
Mapoly0093s0072 Marchantia polymorpha HOM05D000640 ORTHO05D004274 2.9e-07 59.3 66 47.0
Phvul.002G148700 Phaseolus vulgaris HOM05D000640 ORTHO05D004274 2.9e-07 59.3 66 48.5
CAN.G525.43 Capsicum annuum HOM05D000640 ORTHO05D004274 3.8e-07 58.9 64 46.9
Carub.0004s0164 Capsella rubella HOM05D000640 ORTHO05D004274 5.0e-07 58.5 66 45.5
AUR62003284 Chenopodium quinoa HOM05D000640 ORTHO05D004274 5.0e-07 58.5 67 44.8
AUR62027181 Chenopodium quinoa HOM05D000640 ORTHO05D004274 5.0e-07 58.5 67 44.8
Aqoxy5G01329 Aquilegia oxysepala HOM05D000640 ORTHO05D004274 6.5e-07 58.2 66 45.5
Lj7C395T20 Lonicera japonica HOM05D000640 ORTHO05D004274 6.5e-07 58.2 60 45.0
Rhsim08G0014700 Rhododendron simsii HOM05D000640 ORTHO05D004274 8.5e-07 57.8 66 45.5
Sp7g35740 Schrenkiella parvula HOM05D000640 ORTHO05D004274 8.5e-07 57.8 64 48.4
vmacro18571 Vaccinium macrocarpon HOM05D000640 ORTHO05D004274 8.5e-07 57.8 66 43.9
BcaB03g12303 Brassica carinata HOM05D000640 ORTHO05D004274 1.1e-06 57.4 64 48.4
BcaB03g12304 Brassica carinata HOM05D000640 ORTHO05D004274 1.1e-06 57.4 64 48.4
BcaC01g00345 Brassica carinata HOM05D000640 ORTHO05D004274 1.1e-06 57.4 64 48.4
A08p23100 Brassica napus HOM05D000640 ORTHO05D004274 1.1e-06 57.4 64 48.4
C03p78730 Brassica napus HOM05D000640 ORTHO05D004274 1.1e-06 57.4 64 48.4
BraA08t34269Z Brassica rapa HOM05D000640 ORTHO05D004274 1.1e-06 57.4 64 48.4
TWI74G0724 Tripterygium wilfordii HOM05D000640 ORTHO05D004274 1.1e-06 57.4 64 46.9
Thhalv10024871m.g Eutrema salsugineum HOM05D000640 ORTHO05D004274 1.4e-06 57.0 64 48.4
Aqoxy3G03364 Aquilegia oxysepala HOM05D000640 ORTHO05D004274 1.9e-06 56.6 66 47.0
PSO675G4062 Papaver somniferum HOM05D000640 ORTHO05D004274 2.5e-06 56.2 66 43.9
Os10g0405600 Oryza sativa ssp. japonica HOM05D000640 ORTHO05D004274 3.2e-06 55.8 64 46.9
Medtr5g032570 Medicago truncatula HOM05D000640 ORTHO05D004274 4.2e-06 55.5 66 47.0
Aa31LG6G15090 Aethionema arabicum HOM05D000640 ORTHO05D004274 5.5e-06 55.1 64 48.4
BolC3t20118H Brassica oleracea HOM05D000640 ORTHO05D004274 7.2e-06 54.7 64 46.9
PSO063G0723 Papaver somniferum HOM05D000640 ORTHO05D004274 7.2e-06 54.7 66 45.5
Pp3c8_15610 Physcomitrium patens HOM05D000640 ORTHO05D004274 7.2e-06 54.7 59 49.2
PSO832G3237 Papaver somniferum HOM05D000640 ORTHO05D004274 9.4e-06 54.3 62 48.4


User provided reference genes

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